PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G080200.2.p

Common Name

GLYMA_06G080200, LOC100804931

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 355aa MW: 39448.5 Da PI: 8.5339

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G080200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.7	6.4e-55	28	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yL +k+++++++ ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk Glyma.06G080200.2.p 28 LPPGFRFHPTDEELVTCYLVNKISDSNFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDK 116 79***********************999.89***********99999********************************* PP NAM 91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 e++++ ++el+g+kktLvfykgrap+gek++Wvmheyr+ Glyma.06G080200.2.p 117 EIFNSeTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRI 155 9867888**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.28E-64	21	176	IPR003441	NAC domain
PROSITE profile	PS51005	60.539	28	176	IPR003441	NAC domain
Pfam	PF02365	3.6E-28	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MQKEKEAIVK EGTTEIEMEG TRAKEETLPP GFRFHPTDEE LVTCYLVNKI SDSNFTGRAI 60 TDVDLNKCEP WELPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNAGYWK TTGKDKEIFN 120 SETSELIGMK KTLVFYKGRA PRGEKSNWVM HEYRIHSKSS YRTNRDEWVV CRVFKKSGNA 180 KKYPSSNHAR AVNPYSLEIE PNILPPLMMQ LGDPGAHFLY GRNYMNSAEL AELARVLRGG 240 GSTSSVNLPI QSHLSYPTSS STGGGFTISG LNLNLGGGGA TATTQPILRP MQPSPAPVHT 300 MAQVLDANSS MMTTSSLGAE NVGYGAEMSN LNLHGNRYMG VDHCMDLDNY WPSY*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MQKEKEAIVK EGTTEIEMEG TRAKEETLPP GFRFHPTDEE LVTCYLVNKI SDSNFTGRAI  60
TDVDLNKCEP WELPGKAKMG EKEWYFFSLR DRKYPTGVRT NRATNAGYWK TTGKDKEIFN  120
SETSELIGMK KTLVFYKGRA PRGEKSNWVM HEYRIHSKSS YRTNRDEWVV CRVFKKSGNA  180
KKYPSSNHAR AVNPYSLEIE PNILPPLMMQ LGDPGAHFLY GRNYMNSAEL AELARVLRGG  240
GSTSSVNLPI QSHLSYPTSS STGGGFTISG LNLNLGGGGA TATTQPILRP MQPSPAPVHT  300
MAQVLDANSS MMTTSSLGAE NVGYGAEMSN LNLHGNRYMG VDHCMDLDNY WPSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	27	182	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	27	182	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	27	182	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	27	182	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	27	182	19	174	NAC domain-containing protein 19
3swm_B	1e-56	27	182	19	174	NAC domain-containing protein 19
3swm_C	1e-56	27	182	19	174	NAC domain-containing protein 19
3swm_D	1e-56	27	182	19	174	NAC domain-containing protein 19
3swp_A	1e-56	27	182	19	174	NAC domain-containing protein 19
3swp_B	1e-56	27	182	19	174	NAC domain-containing protein 19
3swp_C	1e-56	27	182	19	174	NAC domain-containing protein 19
3swp_D	1e-56	27	182	19	174	NAC domain-containing protein 19
4dul_A	1e-56	27	182	16	171	NAC domain-containing protein 19
4dul_B	1e-56	27	182	16	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G080200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	1e-101	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006581414.1	0.0	NAC domain-containing protein 100 isoform X2
Refseq	XP_028235425.1	0.0	NAC domain-containing protein 100-like isoform X2
TrEMBL	K7KTS7	0.0	K7KTS7_SOYBN; Uncharacterized protein
STRING	GLYMA06G08440.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-102	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	Glyma.06G080200.2.p
Entrez Gene	100804931