PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G068800.1.p | ||||||||
Common Name | GLYMA_06G068800, LOC100794649 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 186aa MW: 20791.2 Da PI: 6.2807 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g Glyma.06G068800.1.p 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 59*****999.**********8.....334**********************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.09E-23 | 5 | 65 | No hit | No description |
PROSITE profile | PS51032 | 22.036 | 6 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-39 | 6 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-20 | 6 | 65 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 6 | 65 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 6 | 55 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MVQTKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPTSKNQAE ADDNNNTDTF LSPKALSELL STKLRKYCKD PAPSLTCLRL DADNSHIGVW 120 QKGAGPHSGS NWVMRLELGK KQITEEGSES TESPQSSTNG ATENNEVEEE DRVALQMIEE 180 LLNWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-17 | 2 | 70 | 1 | 70 | ATERF1 |
3gcc_A | 2e-17 | 2 | 70 | 1 | 70 | ATERF1 |
5wx9_A | 8e-17 | 6 | 67 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24460 | 0.0 | flower| leaf| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00527 | DAP | Transfer from AT5G25390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G068800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526409.1 | 1e-136 | ethylene-responsive transcription factor SHINE 2 | ||||
Refseq | XP_028235264.1 | 1e-136 | ethylene-responsive transcription factor SHINE 2-like | ||||
Swissprot | Q3E958 | 5e-76 | SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | A0A445K5Q4 | 1e-135 | A0A445K5Q4_GLYSO; Ethylene-responsive transcription factor SHINE 3 | ||||
TrEMBL | I1K8V5 | 1e-135 | I1K8V5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G07240.4 | 1e-136 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF576 | 33 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 6e-70 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G068800.1.p |
Entrez Gene | 100794649 |
Publications ? help Back to Top | |||
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