PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G061900.1.p
Common NameGLYMA_06G061900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 310aa    MW: 35129.7 Da    PI: 6.8335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G061900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81e-28138195258
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                          +Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rs +d+++++ tYeg+Hnh
  Glyma.06G061900.1.p 138 RDGYQWRKYGQKVTRDNPSPRAYFKCSYApSCPVKKKVQRSLQDKSFLVATYEGKHNH 195
                          7***************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-27136196IPR003657WRKY domain
SuperFamilySSF1182905.89E-24136197IPR003657WRKY domain
SMARTSM007744.8E-31137197IPR003657WRKY domain
PfamPF031062.2E-23139195IPR003657WRKY domain
PROSITE profilePS5081124.925139198IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEMEPTCVDT SLNLNVIPSP HIDHLAGEVL FEELRRLSSE NKRLTETLNH LCESYVALQK  60
HLSEFSQLRN ANFDKEGTCA VPSLKRKPES ENCVNLFGTE CNTITEEETF KRPKHSTEPK  120
VSKVLTRTDA SDTGLYVRDG YQWRKYGQKV TRDNPSPRAY FKCSYAPSCP VKKKVQRSLQ  180
DKSFLVATYE GKHNHGVFRD LLKPSSSIQE TSIMDNYLPM TVMPNDKLDT MNIDLCLCNR  240
AQTDIRRCDD IKEQNDRGSN SKIEEYASSP VKDPDFIMPL AEAVVHSLNS QSYKQVGLNL  300
SLGLPEPHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-191371951471WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.367580.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G061900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0959760.0BT095976.1 Soybean clone JCVI-FLGm-15G12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025984457.10.0WRKY transcription factor 17 isoform X1
TrEMBLA0A0R0JHC60.0A0A0R0JHC6_SOYBN; Uncharacterized protein
STRINGGLYMA06G06530.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.19e-57WRKY DNA-binding protein 40