PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.06G051600.8.p | ||||||||
Common Name | GLYMA_06G051600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 507aa MW: 56374.2 Da PI: 5.9649 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.2 | 1.4e-08 | 423 | 461 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +F++ ++yp+ +e+ LA k gLt +qV++WF N R + Glyma.06G051600.8.p 423 MFQNflHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVR 461 5887779******************************88 PP | |||||||
2 | BELL | 74.4 | 1.7e-24 | 295 | 364 | 1 | 71 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 +r++ ++kk++Ll+ll+ Vd+rY+q+ ++++tv+s+F+a+++l++ ++++++Al++iS +r L+++i++ Glyma.06G051600.8.p 295 QRHAAESKKSQLLTLLQLVDNRYSQCLDEIHTVVSAFQAATELDP-QIHAHFALQTISILYRDLRERISNY 364 68999****************************************.**********************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-21 | 219 | 363 | IPR006563 | POX domain |
Pfam | PF07526 | 1.4E-26 | 225 | 362 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.078 | 402 | 465 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.25E-11 | 405 | 466 | No hit | No description |
SMART | SM00389 | 6.9E-6 | 405 | 469 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-15 | 407 | 474 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 408 | 471 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 7.8E-15 | 422 | 461 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 507 aa Download sequence Send to blast |
MESDMYTAAL DISGREATVI DEISQHSASN PLIQCYSLDL NNQSHIISGI SMLSGEQVGD 60 ASNPMENTEL QEHLAGGMPI TPSSLAAILA ARTGLEENLG NSSSALPPSL CSMGALGAFF 120 NNLQEIDGTC QPYPFIANLD QNEWPSSNVA NMANHAYHSS HFSKELSLSL ATSTTAGMCS 180 EVSCSNVTPC MNGTMSGLEQ ASCSSSRELS MNLGGNKYVE FSPEVLESRY LVGIQEILAQ 240 IGRYSFENLE QLNYSAGNHR SGGNKSSSAF PPKRRILIDH NANSTYEAHA ESPLQRHAAE 300 SKKSQLLTLL QLVDNRYSQC LDEIHTVVSA FQAATELDPQ IHAHFALQTI SILYRDLRER 360 ISNYILAMGS NFNNSCSEEN EWSVETSFLQ KQWALQQLKR KDQLWRPQRG LPERSVSVLR 420 AWMFQNFLHP YPKDAEKHLL AVKSGLTRSQ VSNWFINARV RLWKPMIEEM YAEMNKRKAC 480 RNEEGMQSNH GTRISTTNER FNQCQL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-14 | 411 | 469 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-14 | 411 | 469 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 1e-14 | 411 | 469 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 1e-14 | 411 | 469 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-14 | 411 | 468 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-14 | 411 | 468 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Down-regulated in the shoot apical meristem (SAM) upon floral induction. {ECO:0000269|PubMed:17908157}. | |||||
Uniprot | TISSUE SPECIFICITY: Most abundant in flowers. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.06G051600.8.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT094559 | 0.0 | BT094559.1 Soybean clone JCVI-FLGm-18H4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525994.2 | 0.0 | homeobox protein ATH1 isoform X3 | ||||
Refseq | XP_028235041.1 | 0.0 | homeobox protein ATH1-like isoform X2 | ||||
Swissprot | P48731 | 1e-102 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | K7KT70 | 0.0 | K7KT70_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G05430.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G32980.1 | 3e-96 | homeobox gene 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.06G051600.8.p |
Publications ? help Back to Top | |||
---|---|---|---|
|