PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G050300.1.p
Common NameGLYMA_06G050300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 254aa    MW: 28438.8 Da    PI: 8.3026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G050300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-0984104526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+++++ G Ck+Gd+C+F+Hg
  Glyma.06G050300.1.p  84 ACPDYQK-GNCKRGDTCQFSHG 104
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.28E-578108IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-679105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.65280106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-683106IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-784104IPR000571Zinc finger, CCCH-type
SMARTSM0035632114137IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MIPNVEIPHW DADGGGPLSP FISSSSNADK CSLLFSSDHF RMFQFKVRIC PRGRSHDWTE  60
CPYAHPAEKA RRRDPRKYHY SGTACPDYQK GNCKRGDTCQ FSHGVFECWL HPSRYRTHLC  120
KDGTTCRRRV CFFAHTTEQL RLVVTDSSSS SFVSSPTSVL NSSSFSDSSP YSFVREIVNS  180
TRNVKIEDSG LTRCVFGSPR GGFLSVNGCE EEPAMERVES GKDIRARIYA KLSRENTIGA  240
SDPDIGWVSE LVK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.41560.0flower| root| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G050300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0957360.0BT095736.1 Soybean clone JCVI-FLGm-19F20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304563.20.0zinc finger CCCH domain-containing protein
RefseqXP_028235023.10.0zinc finger CCCH domain-containing protein 23-like
SwissprotO821992e-78C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A445K4U40.0A0A445K4U4_GLYSO; Zinc finger CCCH domain-containing protein 20
TrEMBLI1K8B10.0I1K8B1_SOYBN; Uncharacterized protein
STRINGGLYMA06G05300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.25e-73C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]