PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G038200.1.p

Common Name

GLYMA_06G038200

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NF-YC

Protein Properties

Length: 89aa MW: 10251 Da PI: 9.1187

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G038200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41.1	3.9e-13	1	53	24	76
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkk 76 arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ Glyma.06G038200.1.p 1 ARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNS 53 7***************************************9999888888875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	2.2E-16	1	57	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.7E-21	1	57	IPR009072	Histone-fold
SuperFamily	SSF47113	2.29E-12	7	58	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
ARIKKIMQAD EDVGKIALAV PVLVSKALEL FLQDLCDRTY EITLQRGAKT MNSLHLNSET 60 IYNGFPIIRE RIKDLQDFQP NWLIMYRK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	4e-18	1	66	15	80	Transcription Regulator NC2 alpha chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G038200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT094155	9e-90	BT094155.1 Soybean clone JCVI-FLGm-18C10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018733368.1	3e-33	PREDICTED: dr1-associated corepressor
Refseq	XP_028192968.1	5e-34	dr1-associated corepressor-like
Refseq	XP_028192969.1	5e-34	dr1-associated corepressor-like
Swissprot	Q14919	2e-16	NC2A_HUMAN; Dr1-associated corepressor
TrEMBL	A0A0R0JBL0	8e-59	A0A0R0JBL0_SOYBN; Uncharacterized protein (Fragment)
TrEMBL	A0A445HQF4	8e-59	A0A445HQF4_GLYSO; Dr1-associated corepressor (Fragment)
STRING	GLYMA06G04161.1	6e-33	(Glycine max)
STRING	XP_010067677.1	9e-33	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	5e-33	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Glyma.06G038200.1.p