PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G035700.1.p
Common NameGLYMA_06G035700, LOC100780143
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 331aa    MW: 36740.4 Da    PI: 8.1789
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G035700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.3e-32147200255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.06G035700.1.p 147 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLSHVKSHLQMYRT 200
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.54E-15144201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-28145201IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23147200IPR006447Myb domain, plants
PfamPF002491.9E-7148199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MYTTWHTGMA TFAPLPEPDL SLNISPPFIS DSDAKQVGIS CNGLTLTTKM LYNDMCSTSD  60
SGSSESDLSH ENGFFLMDTA YNLGHHEPTL SLGIETENLN PYPVQQGALS RNNFSHHLHN  120
YQPHTNTLDF KRNARVIHGV KRNIRAPRMR WTTTLHAHFV HAVQLLGGHE RATPKSVLEL  180
MNVKDLTLSH VKSHLQMYRT VKSSDKGSAG YGQTGIGLSQ KPGIVDLHGV LACERPDLPQ  240
PLLKFQRASW QSSKETNSIN YTQNPIINSM YSHLKGNQTM VGGQHYGGLS NCMKEKLDSC  300
SLSRSDMTLD LEFTLGRPTS CKQTTRNQEN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-17148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17148202357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17148202458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.202586e-66cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G035700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006581228.10.0probable transcription factor KAN4
RefseqXP_028234216.10.0probable transcription factor KAN4
TrEMBLA0A445K4950.0A0A445K495_GLYSO; Putative transcription factor KAN4
TrEMBLK7KSW90.0K7KSW9_SOYBN; Uncharacterized protein
STRINGGLYMA06G03901.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.17e-54G2-like family protein