PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G029600.1.p
Common NameGLYMA_06G029600, LOC100809015
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 154aa    MW: 17181.2 Da    PI: 9.5709
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G029600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.2e-133290563
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                         ++ +rkq+NRe+ArrsR RK++ ++eL++ v +L + N +   +++  ++++ ++++e+
  Glyma.06G029600.1.p 32 RKKKRKQSNRESARRSRMRKRKHLDELTKQVSQLAKGNGEILGTIDITTQHYLNVEAEN 90
                         6899***********************************99999999999888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.6E-172892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3813093IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-1031107No hitNo description
PfamPF001708.7E-103278IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.31E-113284No hitNo description
CDDcd147021.10E-153383No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSMASSSGNS SISTKSQSSG SEGDLQVVVD ERKKKRKQSN RESARRSRMR KRKHLDELTK  60
QVSQLAKGNG EILGTIDITT QHYLNVEAEN SILRAQMEEL SQRLQSLNDI VDGIINLTNA  120
TTAYERDCYL TSAQNITTKN NTLCLNQQAV FQW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13452KRKQSNRESARRSRMRKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G029600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0927421e-140BT092742.1 Soybean clone JCVI-FLGm-11L19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527681.21e-108bZIP transcription factor 44
RefseqXP_028234772.11e-108bZIP transcription factor 44-like
SwissprotC0Z2L59e-40BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A445K3V11e-107A0A445K3V1_GLYSO; BZIP transcription factor 44
TrEMBLI1K7P61e-107I1K7P6_SOYBN; Uncharacterized protein
STRINGGLYMA06G03250.11e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2014845
Representative plantOGRP5511678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.18e-26basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]