PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G245900.2.p
Common NameGLYMA_05G245900, LOC100777274
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 358aa    MW: 40718.5 Da    PI: 8.911
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G245900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.7e-2280139357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Glyma.05G245900.2.p  80 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 139
                          7*****************99**************************************97 PP
2Wus_type_Homeobox114.74.5e-3779141365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Glyma.05G245900.2.p  79 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 141
                          79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-577144IPR001356Homeobox domain
PfamPF000467.0E-2080139IPR001356Homeobox domain
SuperFamilySSF466898.55E-1380146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-980139IPR009057Homeodomain-like
CDDcd000861.52E-681141No hitNo description
PROSITE profilePS5007111.45185140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MWMVGYNEGG EFNMADYGFN GRKLRPLMPR PVTSPNNTSN TNSPCLSRIH HGNNFFSQYH  60
NLVADQGKRE FNPPPVVVSS RWNPTPEQLR ALEELYRRGT RTPSAEQIQQ ITAQLRRFGK  120
IEGKNVFYWF QNHKARERQK RRRQMESAAE GHHTRDFDST LEKKDLGASR TVFEVDQTKN  180
WAPSTNCSTL AEESVSIQRA AKAAIAECRT DGWLQFDEGE LQHRRNFMER NATWHMMQLS  240
CPPPPTVSPH LINTSPITST TSMATATTVT ARLMDPKLIK THDLSFFTSP NRENGIIHLS  300
SISTQDDNSV ESQTLQLFPT RNADRSSDNI NQQKETEVSV SAMNAPSQFF EFLPLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G245900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580400.10.0WUSCHEL-related homeobox 1-like isoform X2
RefseqXP_028234065.10.0WUSCHEL-related homeobox 1-like isoform X2
TrEMBLI1K5C40.0I1K5C4_SOYBN; Uncharacterized protein
STRINGGLYMA05G33850.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-63WUSCHEL related homeobox 1