PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G245900.1.p
Common NameGLYMA_05G245900, LOC100777274
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 360aa    MW: 40876.6 Da    PI: 8.911
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G245900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.63.7e-2282141357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Glyma.05G245900.1.p  82 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrfgKIEGKNVFYWFQNHKARERQ 141
                          7*****************99**************************************97 PP
2Wus_type_Homeobox114.74.6e-3781143365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Glyma.05G245900.1.p  81 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKR 143
                          79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.5E-579146IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.7E-982141IPR009057Homeodomain-like
PfamPF000467.0E-2082141IPR001356Homeobox domain
SuperFamilySSF466898.76E-1382148IPR009057Homeodomain-like
CDDcd000861.42E-683143No hitNo description
PROSITE profilePS5007111.45187142IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MWMVGYNEGG EFNMADYGFN GRKLRPLMPR PVTSPNNTSN TNSPCLSRIH HGNNFFSQYH  60
NLASVADQGK REFNPPPVVV SSRWNPTPEQ LRALEELYRR GTRTPSAEQI QQITAQLRRF  120
GKIEGKNVFY WFQNHKARER QKRRRQMESA AEGHHTRDFD STLEKKDLGA SRTVFEVDQT  180
KNWAPSTNCS TLAEESVSIQ RAAKAAIAEC RTDGWLQFDE GELQHRRNFM ERNATWHMMQ  240
LSCPPPPTVS PHLINTSPIT STTSMATATT VTARLMDPKL IKTHDLSFFT SPNRENGIIH  300
LSSISTQDDN SVESQTLQLF PTRNADRSSD NINQQKETEV SVSAMNAPSQ FFEFLPLKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G245900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525189.10.0WUSCHEL-related homeobox 1-like isoform X1
RefseqXP_028234064.10.0WUSCHEL-related homeobox 1-like isoform X1
TrEMBLA0A0B2PRZ20.0A0A0B2PRZ2_GLYSO; WUSCHEL-related homeobox 1
TrEMBLK7KRE90.0K7KRE9_SOYBN; Uncharacterized protein
STRINGGLYMA05G33850.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Representative plantOGRP8416716
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-63WUSCHEL related homeobox 1