PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G227300.1.p
Common NameGLYMA_05G227300, LOC100790601
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20124 Da    PI: 9.9386
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G227300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.47e-221157349
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         ++++  +qvtfskRr+g++KKA+ELS+LC+aeva+++fs+ ++ y +
  Glyma.05G227300.1.p 11 VKDSNTKQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNNPYSF 57
                         5788999********************************99887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-31160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-27175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.96161IPR002100Transcription factor, MADS-box
CDDcd002653.84E-31273No hitNo description
PRINTSPR004042.1E-19323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRRKIEITE VKDSNTKQVT FSKRRTGLFK KANELSILCG AEVAIVVFSP GNNPYSFGHP  60
SVDVVVDKFL KQEPKSNVVQ GTSNEAGDID RLNQQLSNVE DQIREEQKKA AELNERMKQK  120
GVTQTFQNKE LQGSYLEIQK MKDYFDAIEV SDYMLLLAKE PLVGITKQVA TKKRRRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-17179183MEF2 CHIMERA
6bz1_B1e-17179183MEF2 CHIMERA
6bz1_C1e-17179183MEF2 CHIMERA
6bz1_D1e-17179183MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G227300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150346e-80AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524403.11e-128agamous-like MADS-box protein AGL29
TrEMBLK7KRR41e-126K7KRR4_SOYBN; Uncharacterized protein
STRINGGLYMA05G35811.11e-127(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.15e-33AGAMOUS-like 91