PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.05G224400.1.p

Common Name

GLYMA_05G224400, LOC100789199

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C3H

Protein Properties

Length: 354aa MW: 39350 Da PI: 7.4653

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.05G224400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.1e-07	119	139	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck Gd C +aHg Glyma.05G224400.1.p 119 ACPDFRK-GSCKKGDACEYAHG 139 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.8E-5	114	140	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.497	115	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-5	118	141	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.9E-6	119	139	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	149	172	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.559	149	173	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MMLGETHRPN PTVHVPPWAP EIFSPYTGNA DYSPYSMQEA LSALQHYEST DAESDSEVPS 60 REPEVPVDAY SCDHFRMFEF KVRRCARCRS HDWTDCPYAH PGEKARRRDP RKYHYSGTAC 120 PDFRKGSCKK GDACEYAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH TPDQLRVLPQ 180 QSPRSADSYD GSPLRHAIES SCAKSHPFVA SPGSASSPVE SPPMSPMTVS VNEMVASLRN 240 LQLGKVKSLP SSWNVMGSSG FGSPRGPMIR PGFFSLPTTP TQAPTRGGVN YFDQWDQSCC 300 EEEPVMERVE SGRSIRARMF EKLSKENHLD GSGSGSSQIG VPDVGWVSEL VSR*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MMLGETHRPN PTVHVPPWAP EIFSPYTGNA DYSPYSMQEA LSALQHYEST DAESDSEVPS  60
REPEVPVDAY SCDHFRMFEF KVRRCARCRS HDWTDCPYAH PGEKARRRDP RKYHYSGTAC  120
PDFRKGSCKK GDACEYAHGV FECWLHPARY RTQPCKDGTS CRRRVCFFAH TPDQLRVLPQ  180
QSPRSADSYD GSPLRHAIES SCAKSHPFVA SPGSASSPVE SPPMSPMTVS VNEMVASLRN  240
LQLGKVKSLP SSWNVMGSSG FGSPRGPMIR PGFFSLPTTP TQAPTRGGVN YFDQWDQSCC  300
EEEPVMERVE SGRSIRARMF EKLSKENHLD GSGSGSSQIG VPDVGWVSEL VSR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.55583	0.0	cotyledon\| seed coat

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.05G224400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC550308	0.0	KC550308.1 Glycine max C3H-type zinc finger protein (C3H9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001341846.1	0.0	C3H-type zinc finger protein
Refseq	XP_028233788.1	0.0	zinc finger CCCH domain-containing protein 20-like
Swissprot	O82199	1e-127	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A445KS80	0.0	A0A445KS80_GLYSO; Zinc finger CCCH domain-containing protein 20
TrEMBL	I1K618	0.0	I1K618_SOYBN; Uncharacterized protein
STRING	GLYMA05G36110.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76
Representative plant	OGRP1170	16	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-128	C3H family protein

Link Out ? help Back to Top
Phytozome	Glyma.05G224400.1.p
Entrez Gene	100789199

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]