PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G221300.2.p
Common NameGLYMA_05G221300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 1070aa    MW: 117984 Da    PI: 6.6171
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G221300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.1e-21102203199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae++         +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ F   ++L +gD+v+F 
  Glyma.05G221300.2.p 102 FCKQLTASDTSTHGGFSVPRRAAEKIfppldysV-QPP-AQELVARDLHDNVWRFRHIYRGQPKRHLLTTGWSLFIGGKRLLAGDSVLFV 189
                          99*****************************843.333.359************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++++l+++++r+
  Glyma.05G221300.2.p 190 --RDEKQQLLLGIRRA 203
                          ..5688889****997 PP
2Auxin_resp117.11.5e-38228311183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+a++++s+F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+feteds +rr++Gt++gvsdld+vrW+nS Wr+L+
  Glyma.05G221300.2.p 228 AAQAVANNSPFTVFYNPRASPSEFVIPLAKYSKAVYsHHISPGMRFRMMFETEDSGTRRYMGTIIGVSDLDSVRWKNSLWRNLQ 311
                          789********************************9899*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.76E-4291230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-3993217IPR015300DNA-binding pseudobarrel domain
CDDcd100171.30E-17101193No hitNo description
SMARTSM010197.0E-21102204IPR003340B3 DNA binding domain
PfamPF023622.6E-19102203IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533102204IPR003340B3 DNA binding domain
PfamPF065075.4E-34228311IPR010525Auxin response factor
PfamPF023095.0E-79551042IPR033389AUX/IAA domain
PROSITE profilePS5174527.3029571041IPR000270PB1 domain
SuperFamilySSF542775.3E-69701035No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MASLCGAASQ PAFAWNSRRL LPSRPQRTGS SVFEERRGCS SPELYQSPLQ DTLSSSQCHA  60
AYPDTDEVYA QMTLQPVPSF DTDALLRSDI FLRSSKPQPE FFCKQLTASD TSTHGGFSVP  120
RRAAEKIFPP LDYSVQPPAQ ELVARDLHDN VWRFRHIYRG QPKRHLLTTG WSLFIGGKRL  180
LAGDSVLFVR DEKQQLLLGI RRANRQPSNL SSSVLSSDSM HIGVLAAAAQ AVANNSPFTV  240
FYNPRASPSE FVIPLAKYSK AVYSHHISPG MRFRMMFETE DSGTRRYMGT IIGVSDLDSV  300
RWKNSLWRNL QVGWDESTAE ERQSRVSVWE IEPVTTPYFI CPPPFFRSKI PRLLGMPDDE  360
PDFNNLFKST VPWLGDDMCV KGPQALPGLS LVQWMNIQQN PALASSLQPN CGPSMSGLVL  420
QNLPGADIAN PLGFSTSQIS QSNNVSVDAQ NILQTSQQLD HIQKPPCPSS ALGAVTQPLQ  480
QLGDITQQPR NLTNQTLPHD QAHTQLLNPQ RVVQTNNIHQ QQQSSIQKQQ LLRSLSQNRA  540
QKHQQTTLGL NERQIVFQSP MPDHFNQQLQ MSDNQVRFQL LQKLQQQQQT LLAQQSALQQ  600
PALIQIQDQQ RQLLDVANNS SSPIPGQVLE NLPTLQNSLP EANSITHQIT MPSSQKNFHY  660
SHLSQQPALL SEMSGHVGLP PTVTTNPLSA SGGSILTGVG QSVITDDVPS CSTSPSTNNR  720
ASVLPPVVSS QIHRSTTIGD DMAQSAVTIS GASTLETMSS NANIVQPKYE VKASLNISKN  780
QNQGNVAPQT YLNGVVQTDY LDSSSSTTSL YHFRSDTHMH QNTNPFSYNP QLVYCRDNSQ  840
NVEVQADARN NVLIGNNVNG QMGMPSNLDS LLTKGTVGLG KELSNKFASG GLLRDLENNK  900
GVPPEISSSM VSQTFEVPDM SFNSIDSTID GSSFLNRGPW DLPPPPPPQQ QQVQRIRTYT  960
KVYKRGAVGR SIDITRYSGY EDLKQDLALR FGIEGQLEDL QRIGWKLVYV DHENDVLLVG  1020
DDPWEEFVNC VRCIKILSPQ EVQQMSLDGD FGNGGLPYPA GSSSDGGNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-12864332120388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G221300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353420.0AC235342.1 Glycine max strain Williams 82 clone GM_WBb0088H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524425.10.0auxin response factor 19-like isoform X1
RefseqXP_028233750.10.0auxin response factor 19-like isoform X1
RefseqXP_028233751.10.0auxin response factor 19-like isoform X1
TrEMBLA0A0R0JZS80.0A0A0R0JZS8_SOYBN; Auxin response factor
STRINGGLYMA05G36430.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.11e-167auxin response factor 19