PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G210600.1.p
Common NameGLYMA_05G210600, LOC100787434
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 512aa    MW: 57364.5 Da    PI: 8.6012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G210600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.2e-12375400126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          y   +C+++ +tG+C yGd+CkF+H+
  Glyma.05G210600.1.p 375 YQPDICKDYKETGYCGYGDSCKFMHD 400
                          66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-9373405IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7374401IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878374402IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10375400IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-12375405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.7E-13439492IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139208.4E-9450491No hitNo description
SuperFamilySSF578501.36E-12450493No hitNo description
SMARTSM001841.8E-4451488IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.439451489IPR001841Zinc finger, RING-type
CDDcd001621.11E-7451492No hitNo description
PROSITE patternPS005180466475IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034247Biological ProcesssnoRNA splicing
GO:0045292Biological ProcessmRNA cis splicing, via spliceosome
GO:0005684Cellular ComponentU2-type spliceosomal complex
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MNNPVRRHAP AAAVVANRST FTGTKSLPKR GQIKSKIVAG ICWTRGPRPN ILETEKKNII  60
PEEPDPIPIS KQSHTPPLLQ NGDQVWSAAA RGRLESVRHG GFRLGFSVAA PKRSNRDSKT  120
QRDRGLRRAS APAAIYYCGE FGKFSLSTEA DLRALDAEPR SLTLECEASL LNFSLCCINI  180
LVMEDSDQPA KSAENQQTEQ VCSFFRKPVN KKNIRKRTIV NEDNEEDSNN ETSLLHIQKK  240
TLKPDNKLYF STGSSKSSAS AEPSEEPGKP VFQFESSKEI QVQHDSKATA TLETETEFSK  300
DARAIRERAL KQAEESLKGK SPSSKNEKLY KGMNSYKDYK AGFRREQTIA SEKAGGSHGP  360
LRASAHIRVS ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM EKEWEEAEKA  420
RKMRLAAGED ADEEGANLTD EDDEDSLPFA CFICRNTFVD PVVTKCKHYF CEHCALKHHA  480
KNKKCFVCNQ PTLGIFNVAH EIRRKMAEDK S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M7e-64285506113317RING finger protein 113A
5z58_M7e-64285506113317RING finger protein 113A
6ff4_t7e-64285506113317RING finger protein 113A
6ff7_t7e-64285506113317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.576110.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G210600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5877030.0KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580553.10.0zinc finger CCCH domain-containing protein 1-like isoform X1
RefseqXP_028233603.10.0zinc finger CCCH domain-containing protein 1-like isoform X1
SwissprotQ8GX841e-162C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A445KRK60.0A0A445KRK6_GLYSO; Zinc finger CCCH domain-containing protein 1 isoform A
TrEMBLK7KS040.0K7KS04_SOYBN; Uncharacterized protein
STRINGGLYMA05G37521.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-142C3H family protein