PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G210300.3.p
Common NameGLYMA_05G210300, LOC100787954
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 636aa    MW: 71175.8 Da    PI: 6.6482
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G210300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox261.6e-084404771954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps  ++  LA++ gL+ rqV++WF N R +
  Glyma.05G210300.3.p 440 FEHflHPYPSDVDKHILARQAGLSRRQVSNWFINARVR 477
                          554459******************************88 PP
2BELL114.36.3e-37301370372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           elqk+k+kLl +leeVd+rYk+y++q+++v+ssFeavag g+a++Y +lAlka+SrhFrcLkd i++ i
  Glyma.05G210300.3.p 301 VELQKRKTKLLAMLEEVDRRYKHYRNQMKAVVSSFEAVAGNGAATVYSALALKAMSRHFRCLKDGIMDEI 370
                          699***************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.7E-54235368IPR006563POX domain
PfamPF075269.4E-47241366IPR006563POX domain
PROSITE profilePS5007112.195418481IPR001356Homeobox domain
CDDcd000867.42E-11421482No hitNo description
SMARTSM003895.6E-8421485IPR001356Homeobox domain
SuperFamilySSF466891.88E-16422487IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-26424487IPR009057Homeodomain-like
PfamPF059204.9E-17438477IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MARQLCEEKS KDMASSSHGL FYSDVSSNNP TIQPHLMNHI QGFVTDPDMF NLTTGMDMIG  60
FSKNLQQHSE SNGVMMWKSF FGKPGQLAGS SSSKTMNGSC SNFYNQHADA YNTNKQDFTS  120
GISETSSENL VVGGAHDSAP WQENRLMVDD SSLRCVFPCE GNQRPSQGLS LSLSSTNPLS  180
IGLQSFELRQ TSHHQHLSDF VSREGFFGKP VNAQQQQQQM LQDGYLSPSK GANIYQGHFL  240
IKNSKFLVPA QVLLNEFCSL GTKENDVLPK QKCSQKNKQW EEGNSGGGSS KNHSLSSLEY  300
VELQKRKTKL LAMLEEVDRR YKHYRNQMKA VVSSFEAVAG NGAATVYSAL ALKAMSRHFR  360
CLKDGIMDEI EATRKGMGEK DHVAAVPGTT RGETPRLRIV DQSLRQQRAF QQISIMETHP  420
WRPQRGLPER SVSVLRAWLF EHFLHPYPSD VDKHILARQA GLSRRQVSNW FINARVRLWK  480
PMVEEMYLEE EKEQENDVAS SDINVPEEDE KPTQEAPLLR IDSECMSSIV NDVTKSGKTI  540
QNDNQMDAFG SVELDFSSYT HAHHSSGVSL TLGLQQHGES GVSLAFLPAA TQSSMFYPRD  600
QIQECQTVQY SLLDAEGQNM PFRNVMGTHL LHDLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A8e-15427485563Homeobox protein Meis2
4xrm_B8e-15427485563Homeobox protein Meis2
4xrs_A7e-15427484158Homeobox protein Meis1
4xrs_B7e-15427484158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.52100.0cotyledon| hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G210300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580557.10.0homeobox protein BEL1 homolog
RefseqXP_006580558.10.0homeobox protein BEL1 homolog
RefseqXP_006580559.10.0homeobox protein BEL1 homolog
RefseqXP_028233600.10.0homeobox protein BEL1 homolog
RefseqXP_028233601.10.0homeobox protein BEL1 homolog
RefseqXP_028233602.10.0homeobox protein BEL1 homolog
SwissprotQ388971e-133BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A445KSJ30.0A0A445KSJ3_GLYSO; Homeobox protein BEL1-like isoform A
TrEMBLI1K6F50.0I1K6F5_SOYBN; Uncharacterized protein
STRINGGLYMA05G37550.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-122TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]