PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G208300.2.p
Common NameGLYMA_05G208300, LOC100795524
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 524aa    MW: 58529.1 Da    PI: 6.891
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G208300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.5e-15323369455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h + ErrRR+++N++f +Lr+++P+ +      K +K++iL  A+eY+k+L+
  Glyma.05G208300.2.p 323 NHVMSERRRRAKLNQRFLTLRSMVPSiS------KDDKVSILDDAIEYLKKLE 369
                          799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-25181IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.666319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-18322381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-14322372No hitNo description
PfamPF000101.4E-12323369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-17323378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-14325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MSFIFNIGQG LPGRTLAKGQ SIWLNNAHSA DCKIFSRSLL AKSASIETVV CFPFREGVIE  60
LGTTEQVSED LSVIERIKTS FLNSLHVDVP NKSVATLKSR KQEDLSYVAF DHNDYNVESI  120
PEVGYEIANT TSPNGSSNAI QANQPLDDTL MVESITNGTS QVQNWQVIDD ELSNCVHNSM  180
NSSDCISPTF ASLENIASAP KCNNPSDPCA RDFQKCNNPK MTLVDPRSDE WHYQRVISTL  240
IKNTDQLLMG MHLQKFPQAS SFVSWRKGEP MDSQWPRAGT SQKLLKKVLF EVPQMHLDGL  300
HESQEENDYK EGMRVEADEN GMNHVMSERR RRAKLNQRFL TLRSMVPSIS KDDKVSILDD  360
AIEYLKKLER RINELEAHRG VTDIETGTRR SPQDTVERTP DHYFSKNNNN NGKKPGMKKR  420
KACGVDEKGR EINLDALKGS YANDVIVSTS DNGIVIEMKC PSRAGRMLEI MEAINSFNID  480
FSSVQSTEAD GNLYLTIKSV LTGPRVATAK RIKLALQKVA SKC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.525070.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G208300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003525395.10.0transcription factor EGL1-like
RefseqXP_028233561.10.0transcription factor EGL1-like
TrEMBLA0A445KS200.0A0A445KS20_GLYSO; Transcription factor GLABRA 3
TrEMBLI1K6H90.0I1K6H9_SOYBN; Uncharacterized protein
STRINGGLYMA05G37770.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-121bHLH family protein