PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G170000.1.p
Common NameGLYMA_05G170000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 159aa    MW: 17982.2 Da    PI: 6.5051
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G170000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.22e-12430733
                 GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkk 33
                         t++p+WR+gp+ ++ LCnaCGl+y k 
  Glyma.05G170000.1.p  4 TSSPHWRSGPEDKSVLCNACGLRYTKW 30
                         79********99999*********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.3E-9329IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.04E-8342No hitNo description
PfamPF003209.8E-10429IPR000679Zinc finger, GATA-type
CDDcd002021.14E-8431No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDITSSPHWR SGPEDKSVLC NACGLRYTKW GSIGLQNYFP NHFKPEYLDN LKNLEGRNNV  60
LQGSSYATDS SNATSGKIHV MWNPYVPSRK RSRVVRMTTS IQRFHEQLLM MWKNEENSND  120
QSSQESEEVL LIDNVNNFIP CNEIGLGCIL LKPEDASA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G170000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580230.11e-108GATA transcription factor 17-like
RefseqXP_028230998.11e-108GATA transcription factor 17-like
RefseqXP_028230999.11e-108GATA transcription factor 17-like
TrEMBLA0A0R0K1U41e-115A0A0R0K1U4_SOYBN; Uncharacterized protein
STRINGGLYMA05G30385.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127471024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.17e-09GATA transcription factor 27