PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G162300.3.p
Common NameGLYMA_05G162300, LOC100798004
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 403aa    MW: 45932 Da    PI: 4.6973
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G162300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.23e-34141052102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl k+ye+++d+++++++sws +++sf+v+++ efa+++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ 
  Glyma.05G162300.3.p  14 FLAKTYEMVDDPSTDSVVSWSITSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFVRGQP 94 
                          9********************999****************************************9998.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +l+++i+r+k 
  Glyma.05G162300.3.p  95 HLMKNIHRRKP 105
                          ********985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.36E-349103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDDAQGSSSS LPPFLAKTYE MVDDPSTDSV VSWSITSKSF IVWNPPEFAR DLLPRFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANDDFV RGQPHLMKNI HRRKPVHSHS LQNLQAQGPI  120
GEAERQSFTD EIEKLKHDKE QLLVELQKYQ HEWQAYEIQM HSSKDRLEKL EQNQQKMVSS  180
VSHVLQKPVI SVNILPLTET MDRKRRLPRS GHFYDEASVE DAMETSQMLP RENADNTTVL  240
TLNVERLDQL ESSMAFWEAI VHDIGDTFVQ IQSNMDFDES TSCADSPSIS CAQLDVEVRP  300
KSPGIDMNSE PTTAAVPEPV ASKEQPAGTT VAATGVNDVF WEQFLTEDPG ASETQEVQSE  360
RKEYDGRKNE GKPSDLNKFW WNKWNANNLP EQMGHVGQAE KT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-24910324129Heat shock factor protein 1
5d5v_B2e-24910324129Heat shock factor protein 1
5d5v_D2e-24910324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201206DRKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G162300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526270.0AY052627.1 Phaseolus acutifolius heat shock transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580179.10.0heat stress transcription factor A-4c
RefseqXP_028232891.10.0heat stress transcription factor A-4c-like
SwissprotO494031e-125HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A445KPK90.0A0A445KPK9_GLYSO; Heat stress transcription factor A-4a isoform A
TrEMBLI1K4310.0I1K431_SOYBN; Uncharacterized protein
STRINGGLYMA05G29470.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-120heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]