PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.05G148700.1.p
Common NameGLYMA_05G148700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23141 Da    PI: 9.5318
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.05G148700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.66.7e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienksnrq+tfskRr+g++KKA ELS+LCda+ a++ifsstgklye +
  Glyma.05G148700.1.p  9 KRIENKSNRQITFSKRRKGLMKKARELSILCDAKLALLIFSSTGKLYELC 58
                         79*********************************************966 PP
2K-box48.24.8e-171081664199
                K-box  41 edLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           +Le Ls+ +L++Le+ ++++l++iRs K++l++e++e+l+kke+ l++en+ L+k+++
  Glyma.05G148700.1.p 108 SELEHLSVTDLMELEKLVHSALSRIRSAKMRLMMESVENLKKKEHILRNENELLEKQVK 166
                          68*****************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-29175IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-35160IPR002100Transcription factor, MADS-box
CDDcd002651.96E-33270No hitNo description
PRINTSPR004042.6E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-251056IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.63281171IPR002487Transcription factor, K-box
PfamPF014865.7E-15100165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009910Biological Processnegative regulation of flower development
GO:0010048Biological Processvernalization response
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGKKKLEIKR IENKSNRQIT FSKRRKGLMK KARELSILCD AKLALLIFSS TGKLYELCNG  60
DSLAEVVQRY WDNLGASGTD TKGLRFEIAD IWSDEAFSQL VQSHFGVSEL EHLSVTDLME  120
LEKLVHSALS RIRSAKMRLM MESVENLKKK EHILRNENEL LEKQVKMYTK SCTESYMSIL  180
SFYVVNILFF YSILELSINK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18161161MEF2C
5f28_B2e-18161161MEF2C
5f28_C2e-18161161MEF2C
5f28_D2e-18161161MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.372510.0leaf| pod| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.05G148700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2525680.0EU252568.1 Glycine max flowering locus C-like protein 1 (FLCL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524905.11e-116MADS-box protein FLOWERING LOCUS C isoform X2
RefseqXP_028232719.11e-116MADS-box protein FLOWERING LOCUS C-like isoform X2
TrEMBLA0A0B2RJT71e-142A0A0B2RJT7_GLYSO; MADS-box protein FBP24
TrEMBLI1K3N41e-142I1K3N4_SOYBN; Uncharacterized protein
STRINGGLYMA05G28130.11e-143(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.28e-41AGAMOUS-like 31