PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G096500.1.p | ||||||||
Common Name | GLYMA_05G096500, WRKY11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 36239.9 Da PI: 10.2097 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.4 | 2.2e-31 | 263 | 320 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ Glyma.05G096500.1.p 263 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHT 320 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 7.6E-17 | 213 | 259 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.8E-33 | 249 | 320 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.859 | 256 | 322 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-27 | 258 | 321 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-38 | 261 | 321 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-27 | 263 | 319 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAVDLMTTGC SRNDNINSFT TKAEENAVQE AASGLESIEK LIRLLSQTQT QTRHQINNNS 60 SNEIAIAMDC KVVADVAVSK FKKVISLLGR TRTGHARFRR APLPNQNQHT QPPSEPPVFH 120 ATPLHQIPPP SLHQIPKTER NLNDSSSSKT IHFSYPSAAT SFISSLTGDG AADNKQPSSS 180 PPAAAATTTP FQITSLSHVS SAGKPPLSTS SFKRKCSSEN LGSGKCGSSS SRCHCSKKSR 240 KMRLKRVVRV PAISLKMADI PPDDYSWRKY GQKPIKGSPH PRGYYKCSSV RGCPARKHVE 300 RALDDPAMLV VTYEGEHNHT LSAADATNLI LESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-21 | 258 | 323 | 14 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-21 | 258 | 323 | 14 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27164 | 0.0 | epicotyl| flower| leaf| meristem| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G096500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375356 | 0.0 | EU375356.1 Glycine max transcription factor (WRKY11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237671.1 | 0.0 | WRKY transcription factor 11 | ||||
Refseq | XP_028232119.1 | 0.0 | probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 8e-89 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A1X9Q1Z3 | 0.0 | A0A1X9Q1Z3_GLYSO; Putative WRKY transcription factor 15 | ||||
TrEMBL | B0LUS5 | 0.0 | B0LUS5_SOYBN; Transcription factor | ||||
STRING | GLYMA05G20710.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 | Representative plant | OGRP8844 | 6 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 3e-74 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G096500.1.p |
Entrez Gene | 100170685 |
Publications ? help Back to Top | |||
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