PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G086000.1.p | ||||||||
Common Name | GLYMA_05G086000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 178aa MW: 20657.6 Da PI: 9.7815 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.1 | 5.1e-51 | 11 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deel+v+yL++kv+++++++ ++i+e+d+y+++Pw+Lp+ k+ +e+ewyfF++rd+ky++g r+nra++sgyWka g+ Glyma.05G086000.1.p 11 LPPGFRFHPSDEELIVHYLRNKVTSSPFPT-SFIAEIDLYNYNPWELPSlcKALFREDEWYFFTPRDRKYPNGVRPNRAAASGYWKAIGT 99 79***************************9.89***************6334444899******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+++++ + + + +kk Lvfykgr pkg+ktdW+mheyrl Glyma.05G086000.1.p 100 DKPIFTScGIKSIVVKKALVFYKGRPPKGSKTDWIMHEYRL 140 ******966678***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-56 | 8 | 146 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.517 | 11 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 12 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDKDANSKIQ LPPGFRFHPS DEELIVHYLR NKVTSSPFPT SFIAEIDLYN YNPWELPSLC 60 KALFREDEWY FFTPRDRKYP NGVRPNRAAA SGYWKAIGTD KPIFTSCGIK SIVVKKALVF 120 YKGRPPKGSK TDWIMHEYRL HDSTISNSKQ GGSMRVGQFH EFNFSIWWFL MTNSVNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-58 | 2 | 140 | 6 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the base of the inflorescence meristem and at late stages of development in petals and stamens. Up-regulated during leaf senescence. {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:9489703}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in senescing leaves, petals and sepals. {ECO:0000269|PubMed:16640597}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to, and transactivates the promoter of the abscisic aldehyde oxidase AAO3. Promotes chlorophyll degradation in leaves by enhancing transcription of AAO3, which leads to increased levels of the senescence-inducing hormone abscisic acid (ABA) (PubMed:25516602). Involved in the control of dehydration in senescing leaves. Binds to the DNA sequence 5'-CACGTAAGT-3' of SAG113 promoter. SAG113 acts as negative regulator of ABA signaling for stomatal closure in leaves, and controls water loss during leaf senescence (PubMed:22184656). Transcription factor of the NAC family involved in senescence. May function in the transition between active cell division and cell expansion (PubMed:16640597). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:16640597, ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:25516602}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G086000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by the heterodimer APETALA3 (AP3)/PISTILLATA (PI) (PubMed:9489703). Induced by senescence (PubMed:22184656, PubMed:24659488, PubMed:25516602). Induced by abscisic acid (ABA) (PubMed:22184656, PubMed:25516602). Induced by ethylene (PubMed:25516602). {ECO:0000269|PubMed:22184656, ECO:0000269|PubMed:24659488, ECO:0000269|PubMed:25516602, ECO:0000269|PubMed:9489703}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235460 | 1e-162 | AC235460.1 Glycine max strain Williams 82 clone GM_WBb0169H15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003525764.2 | 1e-109 | NAC transcription factor 29 | ||||
Refseq | XP_028230759.1 | 1e-109 | NAC domain-containing protein 2-like | ||||
Swissprot | O49255 | 5e-70 | NAC29_ARATH; NAC transcription factor 29 | ||||
TrEMBL | A0A0R0JY73 | 1e-130 | A0A0R0JY73_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KLC7 | 1e-130 | A0A445KLC7_GLYSO; NAC transcription factor 29 | ||||
STRING | GLYMA05G15533.1 | 1e-114 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-72 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G086000.1.p |