PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.05G018800.1.p | ||||||||
Common Name | GLYMA_05G018800, LOC100798351 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28229.2 Da PI: 9.0989 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA E+SvLCda+va+i+fs++gkl +ys+ Glyma.05G018800.1.p 9 KRIENKINRQVTFSKRRSGLLKKAREISVLCDADVALIVFSTKGKLLDYSN 59 79**********************************************985 PP | |||||||
2 | K-box | 90.3 | 3.5e-30 | 78 | 179 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.....ekelq 88 ++ + ++ +e++ e++kLk+++e Lqr+qR+++GedL+sL+l+ Lq+LeqqL+++lk+iRs+Kn+ + e+i+elqkk + l+ Glyma.05G018800.1.p 78 RQLVGDDQPPNENWVIEHEKLKARVEVLQRNQRNFMGEDLDSLNLRGLQSLEQQLDSALKHIRSRKNQAMNESISELQKKyfimqDRTLR 167 555666677789*******************************************************************95555458889 PP K-box 89 eenkaLrkklee 100 e+n+ L+kk++e Glyma.05G018800.1.p 168 EHNNLLSKKIKE 179 999999999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.978 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.57E-40 | 2 | 79 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-31 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.7E-25 | 87 | 177 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.08 | 88 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRSGLLK KAREISVLCD ADVALIVFST KGKLLDYSNQ 60 PCTERILERY ERYSYAERQL VGDDQPPNEN WVIEHEKLKA RVEVLQRNQR NFMGEDLDSL 120 NLRGLQSLEQ QLDSALKHIR SRKNQAMNES ISELQKKYFI MQDRTLREHN NLLSKKIKEK 180 EKELTPQEQE GLQNNMDVSS VLVTQPLESL TIGGSPEVKS NEETPTSCRP KTILPPLMPL 240 PTNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 6e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 6e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 6e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 6e-18 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4041 | 0.0 | flower| leaf| meristem| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Vascular tissue of cauline leaves, floral shoot apex and valves of carpels and fruits. {ECO:0000269|PubMed:9502732}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1 and CAULIFLOWER. Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:28586421). Seems to be partially redundant to the function of APETALA1 and CAULIFLOWER in the up-regulation of LEAFY. Is also required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:28586421). Probably not required for fruit elongation but instead is required to prevent ectopic activity of IND. Represses SAUR10 expression in stems and inflorescence branches (PubMed:28586421). {ECO:0000269|PubMed:10648231, ECO:0000269|PubMed:15035986, ECO:0000269|PubMed:28586421, ECO:0000269|PubMed:9502732}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.05G018800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Dramatically up-regulated upon the transition from vegetative to reproductive development. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031177 | 0.0 | KT031177.1 Glycine max clone HN_CCL_28 MADS transcription factor (Glyma05g07380.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006579700.1 | 1e-179 | truncated transcription factor CAULIFLOWER A-like isoform X1 | ||||
Swissprot | Q38876 | 3e-97 | AGL8_ARATH; Agamous-like MADS-box protein AGL8 | ||||
TrEMBL | A0A0R0JPQ8 | 1e-178 | A0A0R0JPQ8_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445KIK7 | 1e-178 | A0A445KIK7_GLYSO; Agamous-like MADS-box protein AGL8-like isoform B | ||||
STRING | GLYMA05G07380.1 | 1e-164 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 3e-93 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.05G018800.1.p |
Entrez Gene | 100798351 |