PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G239500.1.p

Common Name

GLYMA_04G239500, LOC778117

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 290aa MW: 31989.2 Da PI: 4.6439

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G239500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	7.2e-38	44	99	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC stntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Glyma.04G239500.1.p 44 PNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 99 68***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-24	35	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	44	98	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.4E-32	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MFPRSFNISG GDAGLPQMLH PRHMVTPMEE QQRSRWKPSV EVAPNCPRCA STNTKFCYYN 60 NYSLSQPRYF CKGCRRYWTK GGSLRNVPVG GGCRKNRRGK SSSSSRLQHQ SHQRAFSCEN 120 TESSSVGDDA QQNNNVSRDI DMALVFAKFL NPKPTTGEDN NGSPSSNNYL TPESVEIEND 180 AVVQSQNKAS SDPVIVESEN LSLVEIDELE RLLGVCGDED GLWSDATLSS SVTWEPPLKE 240 SEYSMPLNED DGDQLLPIII SASTMSDTCW SNWSSFDLST MDALSSSPS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61830	0.0	epicotyl

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G239500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857274	1e-168	DQ857274.1 Glycine max Dof23 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003522553.1	0.0	dof zinc finger protein DOF3.5
Refseq	XP_028227101.1	0.0	dof zinc finger protein DOF3.5-like
TrEMBL	A0A445L4M5	0.0	A0A445L4M5_GLYSO; Dof zinc finger protein DOF3.5
TrEMBL	K7KLZ8	0.0	K7KLZ8_SOYBN; Uncharacterized protein
STRING	GLYMA04G41830.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	7e-36	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.04G239500.1.p
Entrez Gene	778117