PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G234600.1.p

Common Name

GLYMA_04G234600, LOC102670540

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 250aa MW: 28558.8 Da PI: 8.5927

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G234600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	75.5	6.3e-24	141	188	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++++k+F pi++AAk L+v+lT+LKr+CR++++kRWPhRk+ksl Glyma.04G234600.1.p 141 LKFDEIRKHFGVPITEAAKRLNVGLTMLKRRCRELNVKRWPHRKLKSL 188 899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	126	209	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-22	141	188	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MGFVFVSDHD IVPHTFNSSF SSAQVNHTHK IMEISPLEGF SELDWPYSSN HLCFNEFPDL 60 ENLDLDFSLP PLGEYLEEEL DQKPLNIVVS QGVHCNREKG FGEASSFTIE NGSATASYVQ 120 NIIRQRPQPV SSSSKKKTCV LKFDEIRKHF GVPITEAAKR LNVGLTMLKR RCRELNVKRW 180 PHRKLKSLQL LIDNVKEMGL EDEVARVEKH KRLLEKLPGM ELSEEAKKLR QACFKANYKK 240 RRCMASLQA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G234600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC188370	7e-59	AC188370.9 Glycine max cultivar PI 96983 clone gmp1-120k16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006578896.1	0.0	protein RKD4 isoform X1
TrEMBL	K7KLW8	0.0	K7KLW8_SOYBN; Uncharacterized protein
STRING	GLYMA04G41320.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6898	32	47
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-39	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.04G234600.1.p
Entrez Gene	102670540