PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G214200.6.p
Common NameGLYMA_04G214200, LOC100783856
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 834aa    MW: 92187.9 Da    PI: 8.1147
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G214200.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.4e-08138160326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          t +Cr+fa+ G C++G+ C+F H+
  Glyma.04G214200.6.p 138 TQPCRDFAA-GKCRRGSHCHFLHD 160
                          789******.*************6 PP
2zf-CCCH19.41.9e-06262283426
                          ---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                           lC+ffa  G+C+ G  C+F+H+
  Glyma.04G214200.6.p 262 TLCKFFAN-GHCRNGKYCRFSHD 283
                          59**8888.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0012135161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61135162IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5138160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-6138161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.38194221IPR000571Zinc finger, CCCH-type
SMARTSM003560.46195220IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-5258284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.281258285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6260283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4263288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MSGSGKKRSS KWDLRDDPDF SPDDSQQLRS GWSSAGDKLK PGMGFSSKEP FSGGRGSNKD  60
DIMNKDYRVL DATMEWDEDG SYNNEMSPGL EGWKHNKRHS QSPKNGWSRS SRSRSPPHGF  120
RWDSGVNDRN RMRAGGSTQP CRDFAAGKCR RGSHCHFLHD NQNHEDSWED KYREDGAPRY  180
SAPHEGRDYS LKSGRSNEAC INFPKGRCRM GASCKFVHHN NSDGHSKVSV DELAREREID  240
RRHRDSSFEQ GGGHGPNRSG DTLCKFFANG HCRNGKYCRF SHDRQACRSP NRRSRDDRWA  300
SNPGGDYHML DRPKLSDSVS PNRRPRDDRW GSDGNRADAD KVWDSPKRND TVAVSDTAKL  360
VEDKSENVVA AEQGFTPLAT RDGWGHSLDK SRVHGEQPFS SDKKEADSWI TGNNAANMHG  420
SQSIGTDIWL GDDAKMSPDW DYRVRSSSCI EEKHEQNKHG ITQGFMYLDT SEHDRIQIAP  480
GQGFNQNAVS FNSLHSSSCQ AVGQSQVAVP ILPSKGGIVD GMLKQEVSTE KKYTAEPNIM  540
DAGLSQVSSR NPPPTANVVG KEQLAQLTNL SASLAHILGT GQQLPQLYAA LNSHDAKDIS  600
SLAKTEVPAM PVSNTFIRPD PTVGLLKQYD PMCDSVEPKG AVASGVPPAI PPSQKVADVV  660
EIPSQSNTGR QNCGDSSKAA GSEELVKSDP LIQLQPGQNT GVNKDNNKEM LPEETLKSKD  720
DPKSTKESGP FENMEQTDGP DEAKKIKGMK GNRAFKFALV EFVKELLKPT WKDGQITKED  780
YKTIVKKVVD KVTGSMQGVN IPQTQEKIDH YLSFSKPKLN KLVQAYVEKV QKA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.387440.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G214200.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006578794.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLK7KLH90.0K7KLH9_SOYBN; Uncharacterized protein
STRINGGLYMA04G39221.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-13C3H family protein