PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G199900.1.p | ||||||||
Common Name | GLYMA_04G199900, Glyma04g37690.1, LOC100796018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 347aa MW: 38940.5 Da PI: 7.0491 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.4 | 3e-09 | 170 | 217 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Glyma.04G199900.1.p 170 SHSLAERVRREKISERMKVLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 217 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.26E-10 | 164 | 221 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-17 | 164 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.79 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 166 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.8E-6 | 170 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-10 | 172 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MAAFSYQYHP FLVDPAFFPN NLNTPSPPPH QFQQLPHETS SFNVTNQETS CVDQSSKITI 60 SDNEPSVTEN LSPQSSMVVD KLETGEQVTQ KVNTPVEKKR KTRNGSSLTS NPQSKDAATE 120 RKNKKQRKGN GGLKEEDKAK EEKKEQRKCP EEPPTGYIHV RARRGQATDS HSLAERVRRE 180 KISERMKVLQ RLVPGCDKVT GKALMLDEII NYVQSLQNQV EFLSMKLASV NPMFYDLATD 240 LDTLLVRPEK LNSMASPSPP LPSVSHCNSP NNQATTFADT TTMTPTNIFH IASDYLLDNS 300 VSFFLQGQRS NVFSEEDTGS HFWDAEDQRQ KFLHPCGFSN NLCSFH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.33388 | 0.0 | cotyledon| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G199900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031252 | 0.0 | KT031252.1 Glycine max clone HN_CCL_23 bHLH transcription factor (Glyma04g37690.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006578721.1 | 0.0 | transcription factor bHLH137 | ||||
Refseq | XP_028229482.1 | 0.0 | transcription factor bHLH137-like | ||||
TrEMBL | A0A445L2Y6 | 0.0 | A0A445L2Y6_GLYSO; Transcription factor bHLH137 isoform A | ||||
TrEMBL | I1JXP3 | 0.0 | I1JXP3_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA04G37690.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4182 | 33 | 58 | Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 1e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G199900.1.p |
Entrez Gene | 100796018 |
Publications ? help Back to Top | |||
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