PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G176700.1.p
Common NameGLYMA_04G176700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 267aa    MW: 30195.2 Da    PI: 9.7502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G176700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.4e-111359147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg WTteEd + +    ++ +g+W++++++  ++R++k+c++rw +y
  Glyma.04G176700.1.p 13 RGVWTTEEDTKKLAFGSKHRSGNWTSVPKKSRLKRCGKSCRLRWTNY 59
                         899******************************************99 PP
2Myb_DNA-binding30.21e-0968108346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          ++Tt+Ed l+ ++++  G++ W+ +a+ +  gRt++++k++w++
  Glyma.04G176700.1.p  68 NFTTQED-LIMKLHAAIGSR-WSIVAQQLL-GRTDNDVKNYWNT 108
                          5677766.789*********.********9.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-15563IPR009057Homeodomain-like
PROSITE profilePS5129410.62860IPR017930Myb domain
SuperFamilySSF466891.52E-2010106IPR009057Homeodomain-like
SMARTSM007177.2E-61262IPR001005SANT/Myb domain
PfamPF002491.5E-91359IPR001005SANT/Myb domain
CDDcd001673.29E-51659No hitNo description
PROSITE profilePS5129416.16261114IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-1864114IPR009057Homeodomain-like
SMARTSM007173.4E-665112IPR001005SANT/Myb domain
CDDcd001671.76E-568110No hitNo description
PfamPF002493.0E-870108IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MVRYPCEKIN VKRGVWTTEE DTKKLAFGSK HRSGNWTSVP KKSRLKRCGK SCRLRWTNYP  60
RPDLKDDNFT TQEDLIMKLH AAIGSRWSIV AQQLLGRTDN DVKNYWNTKL KKKLSQMGID  120
PVTHKPFSKL ISDYGNIGDC QKPSTPITST NKDFKDAMML GSDPRQTLPQ GFTNINDQPK  180
LSPKTIPVSM FGEDCLSKTS SPSTPSTCFT SSAFSWNDFL LEDAFIPFTN QEQRLEAKSL  240
QASSSDFHFS SSRDISFIKA MLDQEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-21131147108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, expressed from stage 4 to stage 6 in microsporocytes and tapetal cells. At the tetrad stage, expressed predominantly in tapetal cells. During microgametogenesis, expression decreases radically in the tapetum and microspores. {ECO:0000269|PubMed:21957980}.
UniprotTISSUE SPECIFICITY: Expressed in the tapetum and middle layer of developing anthers (PubMed:10353220). Expressed in trichomes (PubMed:12848824). {ECO:0000269|PubMed:10353220, ECO:0000269|PubMed:12848824}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA sequence 5'-CCAACC-3'. Regulates directly PME5, UND and GLOX1 (PubMed:21673079). Essential for tapetum development in anthers and microsporogenesis (PubMed:12848824, PubMed:21673079). Regulates the timing of tapetal programmed cell death (PCD) which is critical for pollen development. May act through the activation of UND, encoding an A1 aspartic protease (PubMed:21673079). Required for anther development by regulating tapetum development, callose dissolution and exine formation. Acts upstream of A6 and FAR2/MS2, two genes required for pollen exine formation (PubMed:17727613). Negatively regulates trichome endoreduplication and trichome branching (PubMed:12848824). {ECO:0000269|PubMed:12848824, ECO:0000269|PubMed:17727613, ECO:0000269|PubMed:21673079}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G176700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028230557.11e-162transcription factor MYB35-like
SwissprotQ9XHV01e-55MYB80_ARATH; Transcription factor MYB80
TrEMBLK7KKT30.0K7KKT3_SOYBN; Uncharacterized protein
STRINGGLYMA04G34631.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-57myb domain protein 103
Publications ? help Back to Top
  1. Li SF,Iacuone S,Parish RW
    Suppression and restoration of male fertility using a transcription factor.
    Plant Biotechnol. J., 2007. 5(2): p. 297-312
    [PMID:17309685]
  2. Qian H, et al.
    Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis.
    Ecotoxicology, 2015. 24(1): p. 163-71
    [PMID:25348600]
  3. Xiong SX, et al.
    The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana.
    Plant J., 2016. 88(6): p. 936-946
    [PMID:27460657]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]
  5. Li DD,Xue JS,Zhu J,Yang ZN
    Gene Regulatory Network for Tapetum Development in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 1559
    [PMID:28955355]