PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G170600.1.p
Common NameGLYMA_04G170600, LOC100809154
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 399aa    MW: 43725.1 Da    PI: 7.7465
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G170600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.95.8e-41792242119
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                          ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++  + s +ss+s+ s +  
  Glyma.04G170600.1.p  79 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSVPsq 168
                          789******************************************************************999877777777774444455 PP

                  TCP  89 .........................kaaksaakskksqksaasalnlakesrakar 119
                                                      ++++  +++++++++  ++++e r++++
  Glyma.04G170600.1.p 169 lrssyfhnsnfslqprrslflentnTPPTTTTLLHFQSNNNNAIFQPKHELRESSS 224
                          55666666667787777777777643333333555555555555566555554444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-4183243IPR005333Transcription factor, TCP
PROSITE profilePS5136927.50585139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MKGGSDDFHH HHHHHHHNHH RQNFPFQLLE KKEDQQDPSS CSTSSPYPPL AILAEPSTSN  60
NNNQLLPTPS SEPSPKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS  120
DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR SSYFHNSNFS  180
LQPRRSLFLE NTNTPPTTTT LLHFQSNNNN AIFQPKHELR ESSSLDLSSE NNNEEGNFGR  240
KRRPLEQDLS STIQHQVGNY LMQSNTSGTI PASHHAQIPA NIWMLANSNN HHLGGGVSGE  300
APPLWTFPGV SNSAALYRGT MSSGLHFMNF PTPMALLPGQ QLGSSGIGGN MNNNEGHLSM  360
LSGLNPNYRT TVIGISESQA SESQSTHHGG SEDRHEHE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G170600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003523027.10.0transcription factor TCP14
RefseqXP_028229104.10.0transcription factor TCP14-like
SwissprotQ93Z003e-62TCP14_ARATH; Transcription factor TCP14
TrEMBLK7KKP20.0K7KKP2_SOYBN; Uncharacterized protein
STRINGGLYMA04G33771.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Representative plantOGRP26991230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.17e-38TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]