PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.04G169000.1.p

Common Name

GLYMA_04G169000, LOC100782238

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 275aa MW: 32085.1 Da PI: 5.4731

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.04G169000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.7	1.5e-25	141	190	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s +++s+yF++pi +AA+eL+v+lT LK++CR++GI+RWPhRk+ sl Glyma.04G169000.1.p 141 KMLSRKTVSQYFYMPISQAARELNVGLTHLKKRCRELGIQRWPHRKLLSL 190 78999*****************************************9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	123	210	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-21	143	190	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MENQQLTFWK SNYEIDDYPF APTCQFSSYD YCSWGNANDG YHWPYEFPLQ DSYLDAIPYM 60 KCYYPHDILY ESTLPIEPTS LSIRDYDFSD VKNVLSALNE TDGSDHKPAF SSCNDGESVD 120 EMQEDLKGKK CREEGISSSA KMLSRKTVSQ YFYMPISQAA RELNVGLTHL KKRCRELGIQ 180 RWPHRKLLSL QTLIKNIQEQ RETGGHENDE KTRAAIEILE REQRKVEEMP DLELEDNTRR 240 LRQACFKANY KKRKLMGMRL IEPDSSLSGL FNKY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.04G169000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	2e-43	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006578571.1	0.0	protein RKD1
Refseq	XP_028229082.1	0.0	protein RKD1-like
TrEMBL	A0A445L1A5	0.0	A0A445L1A5_GLYSO; Protein RKD1 isoform A
STRING	GLYMA06G20881.1	1e-173	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	4e-55	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.04G169000.1.p
Entrez Gene	100782238