PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G115500.1.p
Common NameGLYMA_04G115500, LOC100796545
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 762aa    MW: 82690.6 Da    PI: 6.29
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G115500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32324381260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh+k
  Glyma.04G115500.1.p 324 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHPK 381
                          7****************************************.***************85 PP
2WRKY102.72.1e-32540598159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Glyma.04G115500.1.p 540 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 598
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-29321382IPR003657WRKY domain
SuperFamilySSF1182901.2E-25322382IPR003657WRKY domain
SMARTSM007741.2E-35323381IPR003657WRKY domain
PfamPF031067.4E-25324380IPR003657WRKY domain
PROSITE profilePS5081123.158324382IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.8E-37525600IPR003657WRKY domain
SuperFamilySSF1182902.09E-28532600IPR003657WRKY domain
PROSITE profilePS5081138.32535600IPR003657WRKY domain
SMARTSM007741.9E-37540599IPR003657WRKY domain
PfamPF031067.9E-25541598IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MAGIDDNVGL TGDWGLASPS PRTFFSRMFE EDSVTRSISE HSGSGRTGDL FSGHREPSET  60
GKENMNDRAQ DGDSGAQLTD VSFQTEQKSS SRGGLVERMA ARAGFNAPRL NTESIRSTDL  120
SLNPDIQSPY LTIPPGLSPT TLLDSPVFLA NSLAQPSPTT GKFLFMANGI MRNSELSSDA  180
PEKCKDNGFD DIYTSSFAFK RATDSGSFYH GAGRKMINPT TLPQQSLPGI EVSAQSENSF  240
QSQSVDAVKA QTENKSGFRL QADFAESPPQ KDNGIKMFSA DQRAFDVVGG GNEHSTPIEE  300
QVDEGDQRGN GDSMASGVGG APSEDGYNWR KYGQKQVKGS EYPRSYYKCT HPNCQVKKKV  360
ERSHEGHITE IIYKGTHNHP KPPPNRRSGI GLVNLHTDMQ VDHPEHVEPH NGGDGDLGWA  420
NVQKGNIAGA ASWKHDNLEA ASSASVGPEY CNQQPPNLQT QNGTHFDSGE AVDASSTFSN  480
EEDEDDQGTH GSVSLGYDGE GDESESKRRK LESYAELSGA TRAIREPRVV VQTTSEVDIL  540
DDGYRWRKYG QKVVKGNPNP RSYYKCTNAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP  600
AARASSHVNA NASNAVPGQA SLQTHVHRPE PSEVHNGIGR LERPSLGSFN LPGRQQLGPS  660
HGFSFGMNQS MLSNLVMSGL GHAQAKLPVM PVHSFLAAHQ QQQQHQQQQN QQQRAANDLG  720
FMLPKGEPNV EAIPERGGLN LSNGSSVYQE IMSRMPLGPH M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36324601878Probable WRKY transcription factor 4
2lex_A2e-36324601878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.366860.0leaf| pod| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G115500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195890.0EU019589.1 Glycine max WRKY59 (WRKY59) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522837.10.0probable WRKY transcription factor 2
RefseqXP_006578354.10.0probable WRKY transcription factor 2
RefseqXP_014630112.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLK7KJI00.0K7KJI0_SOYBN; Uncharacterized protein
STRINGGLYMA04G12830.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]