PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.04G045300.1.p
Common NameGLYMA_04G045300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 333aa    MW: 37008.2 Da    PI: 5.8618
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.04G045300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-092562961055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          r+RR+ri +++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Glyma.04G045300.1.p 256 RKRRERIDDRLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 296
                          9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-13245311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.265246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-11255300No hitNo description
PfamPF000101.6E-6256296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGPGVGAFPD GERDCFGKML ANEAHYCSPQ LLEEDDGNVG MQSMFCSTLD VGGNKNMFYS  60
FDSHNSSLQY ISQESSHNNS TCCGHSVFMA NPEDHTNYHF GHVDHVLANS TSMDFCMIDE  120
KNPGSFVQSD IVMKENASLN EDEGSDKSEN VFPAKHLKFK RMSDHMPELK VHVEDKINSH  180
GNGNKKPRVS KDEQHCMKNQ KLDKIGNQAE EINAGSDGHS SSSYTREDDN ASALNFKGKT  240
KASKGSATDP QSLYARKRRE RIDDRLRILQ NLVPNGTKVD ISTMLEEAVQ YVKFLQLQNK  300
LLSSDDLWMY APIAYNGLDL VLNLNPKSSP PL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.04G045300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226992.10.0transcription factor bHLH85-like
TrEMBLK7KI250.0K7KI25_SOYBN; Uncharacterized protein
STRINGGLYMA04G04801.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33880.12e-42ROOT HAIR DEFECTIVE 6-LIKE 2