PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.04G037900.1.p | ||||||||
Common Name | GLYMA_04G037900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 186aa MW: 21100.1 Da PI: 4.9481 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.3 | 5.6e-13 | 96 | 174 | 12 | 98 |
HTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++ r+ lp +f+++ + ++ +tl de+g +++ + ++ + l++GW++F+ a++L +gD ++F+l++r++f +v ++r Glyma.04G037900.1.p 96 TNTRMgGLPVHFCNSLPK---KDEVVTLVDEDGIEYSTIY--LAGKTG--LSGGWRGFAIAHDLTDGDALIFQLIKRTTF--KVYIVR 174 44444489*****77643...3458***************..555544..*************************98888..888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-14 | 45 | 65 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.955 | 86 | 176 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-12 | 94 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-11 | 96 | 175 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-15 | 100 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-14 | 102 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.76E-17 | 103 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MTDECGLETT LEKHETYDKH RDYANRVYAS DEVREKAEKL MSGLDSEYPT FIKSMLQKLL 60 DLFKLLCFDN HGCFLIYFEF CANLNEVKGV QSVYKTNTRM GGLPVHFCNS LPKKDEVVTL 120 VDEDGIEYST IYLAGKTGLS GGWRGFAIAH DLTDGDALIF QLIKRTTFKV YIVRADCPPE 180 DKQLE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.04G037900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528263.1 | 3e-70 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_006581238.1 | 3e-70 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_028234881.1 | 3e-70 | B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_028234882.1 | 3e-70 | B3 domain-containing protein At5g42700-like | ||||
Refseq | XP_028234883.1 | 3e-70 | B3 domain-containing protein At5g42700-like | ||||
TrEMBL | A0A0R0K3F6 | 1e-135 | A0A0R0K3F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G04200.3 | 1e-69 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 | Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-36 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.04G037900.1.p |