PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.03G258700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 246aa MW: 27769.2 Da PI: 7.5002 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.6e-07 | 2 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++ ++t g+ R++k+c++rw +yl Glyma.03G258700.1.p 2 QWRSLPKTAGLLRCGKSCRLRWMNYL 27 5*********99************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 3e-17 | 33 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Glyma.03G258700.1.p 33 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 78 7999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.088 | 1 | 27 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-13 | 2 | 39 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.04E-22 | 14 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.357 | 28 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-17 | 32 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 33 | 78 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.07E-13 | 37 | 78 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 40 | 78 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
GQWRSLPKTA GLLRCGKSCR LRWMNYLRPD IKRGNITPEE DDLIIRMHSL LGNRWSLIAG 60 RLPGRTDNEI KNYWNTHLSK KLRNQGTDPN THDKLTEAPE KKKGRKKNKQ KSTENNKGSE 120 KTLVYLPKPI RVKALSSCIP RTDSTLTLDS NSATTASTSQ EKVQSPEAET KEVNMVWGVS 180 DNIGDNGGIG IFFGEDHDLV NSASYMECYS DDHDTLEKLY EEYLQLLNVE EKPDELDSFA 240 QSLLV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 14 | 82 | 40 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.23808 | 0.0 | leaf |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.03G258700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028226877.1 | 0.0 | transcription factor MYB8-like | ||||
TrEMBL | A0A0R0KQ12 | 0.0 | A0A0R0KQ12_SOYBN; Uncharacterized protein (Fragment) | ||||
STRING | GLYMA03G41965.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-54 | myb domain protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.03G258700.1.p |