PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G202300.1.p
Common NameGLYMA_03G202300, LOC100797418
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 680aa    MW: 73970.2 Da    PI: 7.3363
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G202300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093824191954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Glyma.03G202300.1.p 382 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 419
                          554459******************************88 PP
2BELL116.21.6e-37246317172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          erqe+q+kkakL+ +l+eV++rY+qy++q+++v ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+q+
  Glyma.03G202300.1.p 246 ERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVGSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQV 317
                          79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.0E-62173315IPR006563POX domain
PfamPF075266.3E-47178314IPR006563POX domain
PROSITE profilePS5007112.195360423IPR001356Homeobox domain
CDDcd000862.85E-12363424No hitNo description
SMARTSM003895.3E-9363427IPR001356Homeobox domain
SuperFamilySSF466895.99E-17364430IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-29366429IPR009057Homeodomain-like
PfamPF059202.8E-18380419IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MATYFHHGNS EIQSGGADGL QTLVLMNPGY IHYSDAPPPQ QQTSQTAGNL VFLNPAAVAG  60
GNNNSFNPHA PPSHTQQFVG IPLPNSQDLN HHSMHAHHDV SALHGFLPRM QYNPWNALDP  120
ALAARENPRA QQGLSLGLGS FREGQAPAMS GDDLRISGGS PSSASGVTNN GASGIQSVLL  180
SSKYLKAAHE LLEEVVNVNN GIGTELGKKR GGQNKVVGES SAAGSGDGSV GGEGNGKRSS  240
ELSTAERQEI QMKKAKLIGM LDEVEQRYRQ YHQQMEIVGS SFEQAAGIGS ARTYTALALQ  300
TISKQFRCLK DAIAGQVRTA NKSLGEEDCF GGKMEGSRLK YVDHHLRQQR ALQQLGMIQH  360
NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL  420
WKPMVEEMYT EEMKDHEQNR SEDKSSKSNE DSASKMSAPQ DKGPSNETEA KSFNSKHEVS  480
KSQNTAMVSV SRPSTSPLGV NVRSQSGFSF MGSSELDGIT QGSPKKPRNH EMMHSPNSVP  540
SMSMDVKPND ENNEQLSMKF GVERQGRNES SFMGNQTNFN GGFGQYPIGD IGRFDTEQFT  600
PRLSGNGVSL TLGLDSLPGT HQTFLPNQNI QLGRSLDIGE PNEFGAISTS SPHSTAAYES  660
ISMQNPKRFA AQLLPDFVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16369427563Homeobox protein Meis2
3k2a_B4e-16369427563Homeobox protein Meis2
4xrs_A3e-16369426158Homeobox protein Meis1
4xrs_B3e-16369426158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419690.0cotyledon| leaf| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G202300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521496.10.0BEL1-like homeodomain protein 1
RefseqXP_006577097.10.0BEL1-like homeodomain protein 1
RefseqXP_006577098.10.0BEL1-like homeodomain protein 1
RefseqXP_028226107.10.0BEL1-like homeodomain protein 1
RefseqXP_028226108.10.0BEL1-like homeodomain protein 1
RefseqXP_028226109.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-172BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A445LEK20.0A0A445LEK2_GLYSO; BEL1-like homeodomain protein 1 isoform A
TrEMBLI1JQ890.0I1JQ89_SOYBN; Uncharacterized protein
STRINGGLYMA03G36070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-155BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]