PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G193300.1.p

Common Name

GLYMA_03G193300, LOC778152

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 459aa MW: 51178.2 Da PI: 8.4076

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G193300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.6	7.1e-10	152	214	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke++r rr NRe+Ar +R++a +eeL++k+++L eN+ Lk e + +e+++l++ + Glyma.03G193300.1.p 152 EKEVRRIRRILANRESARQTIRRRQALCEELTRKAASLVVENENLKREKQLALNEYQSLETTN 214 799*******************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	1.6E-8	152	214	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.3E-10	152	216	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	154	217	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.59E-6	155	211	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.4E-5	156	212	No hit	No description
CDD	cd14702	2.87E-13	157	208	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MNNVSMMDAE SEKRSASTIS FSSSSSNSSS SCHRLDRLVD AEEIQAAETL AQLAMRDSHS 60 ADKWCTKQDT TRVTRESPTL LHSDLSLGPG GQAIAGQYPD EKISTTTVET EMFQQDDCSR 120 HMKVEQDADV LPNTSYSLVR SRKSRRNLTE EEKEVRRIRR ILANRESARQ TIRRRQALCE 180 ELTRKAASLV VENENLKREK QLALNEYQSL ETTNKHLKAQ IAKSINTEVE KTPVEPGSSV 240 AEVTPLSGNG PWFLYNHFPV PQIFWPSILQ FSNPVHLQNT SLNSFSIPPN AYVPCSSESE 300 SRHKQNNLIN DNRTQNPFYM FPCPWLFPLP QFGNQQSSPS SSLKDEQDNL SLGKPCSSSS 360 SLNTMANVDY QAALPIKLKT AASGWTEAIS INGPGWATPR SSLDGAYIAT SSLEKKQGQC 420 ICQGRNLVDA VAAAEARKRR KELTKQKSIH NRQSRMHC*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MNNVSMMDAE SEKRSASTIS FSSSSSNSSS SCHRLDRLVD AEEIQAAETL AQLAMRDSHS  60
ADKWCTKQDT TRVTRESPTL LHSDLSLGPG GQAIAGQYPD EKISTTTVET EMFQQDDCSR  120
HMKVEQDADV LPNTSYSLVR SRKSRRNLTE EEKEVRRIRR ILANRESARQ TIRRRQALCE  180
ELTRKAASLV VENENLKREK QLALNEYQSL ETTNKHLKAQ IAKSINTEVE KTPVEPGSSV  240
AEVTPLSGNG PWFLYNHFPV PQIFWPSILQ FSNPVHLQNT SLNSFSIPPN AYVPCSSESE  300
SRHKQNNLIN DNRTQNPFYM FPCPWLFPLP QFGNQQSSPS SSLKDEQDNL SLGKPCSSSS  360
SLNTMANVDY QAALPIKLKT AASGWTEAIS INGPGWATPR SSLDGAYIAT SSLEKKQGQC  420
ICQGRNLVDA VAAAEARKRR KELTKQKSIH NRQSRMHC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	436	441	RKRRKE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28660	0.0	flower

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G193300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC187164	1e-126	AC187164.9 Glycine max cultivar Williams 82 clone gmw2-53i18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014629392.1	0.0	uncharacterized protein LOC778152 isoform X2
TrEMBL	K7KFZ7	0.0	K7KFZ7_SOYBN; Uncharacterized protein
STRING	GLYMA03G35101.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6400	28	34
Representative plant	OGRP4569	13	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19490.1	4e-41	bZIP family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G193300.1.p
Entrez Gene	778152

Publications ? help Back to Top
Liao Y, et al. Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis. Planta, 2008. 228(2): p. 225-40 [PMID:18365246]