PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G191100.1.p | ||||||||
Common Name | GLYMA_03G191100, LOC100788429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 424aa MW: 48268.1 Da PI: 5.5424 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 107.6 | 9.9e-34 | 39 | 129 | 1 | 100 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 aFl+k++e+++d++l+ +isw ++g sfvv+d++ fa++vLp+ Fkh+nf+SFvRQLn+YgF+k+++e+ weF ++ F++gk Glyma.03G191100.1.p 39 AFLSKTFELVDDPSLDPIISWGSTGVSFVVWDPTLFARHVLPRNFKHNNFSSFVRQLNTYGFRKIDTEK---------WEFFNEAFQRGK 119 69****************************************************************999.........************ PP XXXXXXXXXX CS HSF_DNA-bind 91 kellekikrk 100 ++ll++i+r+ Glyma.03G191100.1.p 120 RHLLKNIRRR 129 *********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.97E-34 | 35 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 2.3E-55 | 36 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.4E-36 | 37 | 129 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-30 | 40 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-18 | 40 | 63 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-18 | 78 | 90 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 79 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-18 | 91 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MNSSPSSSQL PSSSADFDKF NSLPRFRPLE CLQGNPVPAF LSKTFELVDD PSLDPIISWG 60 STGVSFVVWD PTLFARHVLP RNFKHNNFSS FVRQLNTYGF RKIDTEKWEF FNEAFQRGKR 120 HLLKNIRRRG PPQSHQVGGN IVPYSDADKA GLEFELESLR KERSVLMQEV VELQQQQRTT 180 LQRARQVNQR LQSAELIQKQ MVSFLARLFE KPAFLTSLQH AKEQRDLGCP KVRRRFIKQH 240 QGQTEISDFL NEGQIVRYQP DWRNVTTSSE IQEMYPVSLE ESPNYLSQAL AKEFSEGTEN 300 LISDEVMSIA DTMGFKSSSF GLDGNLFKGK NVMSSNEGLL AEEFVSFPED LTKETGFPEF 360 SPLGTEGIIK REDKRNTNFD VSGADSSSGN EQWGNPINYE VPEFVVTSGM TDMWDINYLT 420 HSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 7e-24 | 37 | 129 | 17 | 120 | Heat shock factor protein 1 |
5d5u_B | 8e-24 | 37 | 129 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-24 | 37 | 129 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-24 | 37 | 129 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G191100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096133 | 1e-161 | BT096133.1 Soybean clone JCVI-FLGm-15K24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006577056.1 | 0.0 | heat stress transcription factor A-3 | ||||
TrEMBL | I1JPX4 | 0.0 | I1JPX4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G34900.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8782 | 30 | 38 | Representative plant | OGRP10024 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 2e-85 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G191100.1.p |
Entrez Gene | 100788429 |