PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G176600.1.p
Common NameGLYMA_03G176600, LOC100127379
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 449aa    MW: 49579 Da    PI: 8.3603
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G176600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.79.8e-33172228360
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh+k
  Glyma.03G176600.1.p 172 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGNIAEIVYKGEHNHSK 228
                          9***************************************.***************85 PP
2WRKY100.97.6e-32367424259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+vkg+++prsY+rCt   C+v+k+ver+ +dp+ +++tYeg+Hnhe
  Glyma.03G176600.1.p 367 GDGFRWRKYGQKVVKGNPYPRSYFRCTNIMCNVRKHVERAIDDPRSFVTTYEGKHNHE 424
                          5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-29158229IPR003657WRKY domain
SuperFamilySSF1182901.83E-25169229IPR003657WRKY domain
SMARTSM007748.0E-37170228IPR003657WRKY domain
PROSITE profilePS5081123.617172229IPR003657WRKY domain
PfamPF031063.1E-25172226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-31352426IPR003657WRKY domain
SuperFamilySSF1182902.22E-27359426IPR003657WRKY domain
PROSITE profilePS5081133.545361426IPR003657WRKY domain
SMARTSM007748.6E-38366425IPR003657WRKY domain
PfamPF031069.1E-25368424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDIKEAQRVV ISKPVASRPT CSTFKSFSEL LAGAINVSPA IESSPTTVSA IRPKTVRFKP  60
AMNQPPAGFV SSQADTFGAA LDNSSDMSPK LDTKQSLIYK PTAKLVSKTT VSLLANMGNC  120
STNTSSNLDQ SITPQTETNY QSSEPSKMVQ QNIEEDQKAL TSSVNCDRPS YDGYNWRKYG  180
QKQVKGSEYP RSYYKCTHPN CPVKKKVERS FDGNIAEIVY KGEHNHSKPQ LHKRNSAAGT  240
QGSGVMSDGM VQDMWSNSHS ERNEGNEVRI ENTGLSMHSD YYVKVPQPND SSLNIGATNA  300
GGGSMENSCG LSGEYEEGSK GFEAQEDEHR SKRRKNENQS NEAALSEEGL VEPRIVMQSF  360
TDSEVLGDGF RWRKYGQKVV KGNPYPRSYF RCTNIMCNVR KHVERAIDDP RSFVTTYEGK  420
HNHEMPLKNT GTVASERDSQ ASLSKDKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-30172426877Probable WRKY transcription factor 4
2lex_A1e-30172426877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.245770.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G176600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312420.0KT031242.1 Glycine max clone HN_CCL_24 WRKY transcription factor (Glyma19g36100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576998.10.0WRKY transcription factor 44 isoform X1
RefseqXP_025983670.10.0WRKY transcription factor 44 isoform X1
RefseqXP_028225767.10.0WRKY transcription factor 44-like isoform X2
TrEMBLA0A445LE450.0A0A445LE45_GLYSO; WRKY transcription factor 44 isoform A
TrEMBLK7KFQ70.0K7KFQ7_SOYBN; Uncharacterized protein
STRINGGLYMA03G33376.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Representative plantOGRP10259810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-107WRKY family protein