PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G162500.1.p
Common NameGLYMA_03G162500, LOC100818907
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 232aa    MW: 25700.9 Da    PI: 7.3431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G162500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-1687132351
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                          y+GVr ++ +g+++AeIrdp+ ng   r+++g+f +aeeAa a+++a+ 
  Glyma.03G162500.1.p  87 YRGVRSRP-WGKFAAEIRDPTRNG--VRVWIGTFVSAEEAALAYDQAAF 132
                          9****999.**********98887..*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3186150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2786144IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2086145IPR016177DNA-binding domain
PROSITE profilePS5103221.32586144IPR001471AP2/ERF domain
CDDcd000182.70E-2687143No hitNo description
PfamPF008472.7E-1087132IPR001471AP2/ERF domain
PRINTSPR003673.1E-98798IPR001471AP2/ERF domain
PRINTSPR003673.1E-9110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDFNSSLFSC QSLESHLNSW EELFSFNNLP LNATNESSLD SKSSSSNEGI MESQEITSNI  60
TCDGHVEEKY SPPPSLLDGS KREKRTYRGV RSRPWGKFAA EIRDPTRNGV RVWIGTFVSA  120
EEAALAYDQA AFLTRGVLAT LNFSVQVVME SLQDMGFKAL KNDLSPVLAL KRMHVTRTKS  180
RASRSGNKKV KRACGSNGKW DTSTQNLLVL EDLGPEYLDQ LLSFTCPGSW C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2685147163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00286DAPTransfer from AT2G31230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G162500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958430.0BT095843.1 Soybean clone JCVI-FLGm-15O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241445.11e-172ethylene-responsive transcription factor 15-like
RefseqXP_028225580.11e-172ethylene-responsive transcription factor 15-like
SwissprotQ8VYM09e-44ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLC6TE231e-171C6TE23_SOYBN; Uncharacterized protein
STRINGGLYMA03G31920.11e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.16e-36ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]