PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G142400.1.p
Common NameGLYMA_03G142400, LOC100815176
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 492aa    MW: 55200.3 Da    PI: 8.2689
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G142400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-10200229534
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                          k  rr+++NReAAr+sR+RKka++++Le  
  Glyma.03G142400.1.p 200 KTLRRLAQNREAARKSRLRKKAYVQQLESS 229
                          7789***********************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.2E-9194242No hitNo description
SMARTSM003381.2E-7196269IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.22198242IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.88E-7200242No hitNo description
PfamPF001707.5E-8200233IPR004827Basic-leucine zipper domain
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
PfamPF141443.6E-32292365IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MMASSKTTNP ITTTTQLEPL PPPQHRHHPH HLHQLQQQQH QHHYHQQIHD HQISFGLMQS  60
SSSSSSIPGN YLGSKDSGAY DLGELDQAFF LYLDGQADPS SVQDQRQNSS SGMRPPTLNI  120
FPSKPMHVEP SSSKSKANIE LVSPQTSGSK RPSEPSMELA NPRNETASAP QPPKPVKREG  180
NRKGPTSSSE HEGPKTPDPK TLRRLAQNRE AARKSRLRKK AYVQQLESSR IRLNQLEQEL  240
QRARTQGMFL GGGALLGGEQ GLPVTMNTIS TEAAMFDVEY ARWQEENHRI VCELRAAVQE  300
HLPENELRLF VDNCLAHYDQ VMNLKSLVAK TDVFHLVSGM WKTPAERCFM WIGGFRPSEL  360
IKIIVSQIEP LTEQQILGIC GLQQSTQEAE EALSQGLEAL NQSLSDTITS DSLSYPPNMA  420
NYMGQMAVAM NKLSTLEGFV RQADNLRHQT IHRLHQILTT RQAARCFLAI AEYFHRLRAL  480
SSLWLARPRQ E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.455480.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G142400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-100AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345638.10.0putative bZIP domain class transcription factor
RefseqXP_028225357.10.0bZIP transcription factor TGA10-like isoform X2
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A445LC330.0A0A445LC33_GLYSO; BZIP transcription factor TGA10
TrEMBLK7KF090.0K7KF09_SOYBN; Uncharacterized protein
STRINGGLYMA03G29825.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Representative plantOGRP75161218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-175bZIP family protein