PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G138600.1.p
Common NameGLYMA_03G138600, LOC100810012
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 681aa    MW: 74906 Da    PI: 5.9964
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G138600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-08277297526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C++Gd C +aHg
  Glyma.03G138600.1.p 277 PCPEFRK-GSCRRGDLCEYAHG 297
                          8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002047.65E-147129No hitNo description
SMARTSM0024822001141IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.2E-1613159IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.04E-1614138IPR020683Ankyrin repeat-containing domain
PfamPF127963.2E-1120127IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.86558128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00615888IPR002110Ankyrin repeat
PRINTSPR014151.7E-55974IPR002110Ankyrin repeat
PROSITE profilePS5008812.50293128IPR002110Ankyrin repeat
SMARTSM002481.5E-493125IPR002110Ankyrin repeat
PRINTSPR014151.7E-5112126IPR002110Ankyrin repeat
SMARTSM003564.1E-5272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774277299IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-5277297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4305335IPR000571Zinc finger, CCCH-type
SMARTSM0035664307330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MNHLSLDTED YSLSSLLELA ANNDVSGFKR LIECDPSSID EVGLWYIRHK ESKKMVNEQR  60
TPLMVAATYG SIDVMKLILS LSEADVNLSC GLDKSTALHC AASGGSENAV DAVKLLLEAG  120
ADVNSVDVNA HRPGDVIVFP TKLEHVKKTS LEELLQKTDD WSLLRVITTT TSCNACSPPL  180
STSPEIEIEI EIESPCSARD SKMKSDEVTE KKEYPVAPSL PDIKNSIYST DEFRMYSFKV  240
RPCSRAYSHD WTECPFVHPG ENARRRDPRK FHYSCVPCPE FRKGSCRRGD LCEYAHGVFE  300
CWLHPAQYRT RLCKDGTNCA RRVCFFAHTN EELRPLYVST GSAVPSPRSG APSSAMDFVT  360
AMTMSPSSPS IAWSQPNIPA LHLPGSNFHS SRLRSSLNAR DISMDDFDLL LPDYDQHQQQ  420
QQFLNELSCL SPHAMNSNPM NRSGRMKLLT PSNLDDLFSA ESSSPRYADP ALASAVFSPT  480
HKSAVFNQFQ QHQQSLLAPV NTNFASKNVE HPLLQASLVM SPRNMEPISP MGSRISMLAQ  540
REKQQFRSLS FRELGSNSAA SAASTTSANS WSKWGSPNGN FDWPVGASDE IGKLRRSSSF  600
ELGNNGEEPD LSWVQSLVKE SPADVKGKFA TTVSNVSAAA AGSSSEGSNM STQMESVVDH  660
AVLGAWLEQM QLDHLVAQQN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.338740.0cotyledon| flower| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G138600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521185.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_006576830.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_006576831.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_006576832.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_006576833.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_025983651.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLK7KEY30.0K7KEY3_SOYBN; Uncharacterized protein
STRINGGLYMA03G29500.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]