PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G112700.1.p | ||||||||
Common Name | GLYMA_03G112700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25651 Da PI: 9.5303 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.6e-19 | 85 | 135 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+eeA a+++a+ k++g Glyma.03G112700.1.p 85 RYRGVRRRP-WGKFAAEIRDPKKNG--ARIWLGTYETEEEAGLAYDRAAFKMRG 135 8********.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.64E-32 | 84 | 145 | No hit | No description |
SMART | SM00380 | 6.4E-37 | 85 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.012 | 85 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-23 | 85 | 144 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 85 | 144 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-14 | 85 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 86 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-13 | 125 | 145 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MATTISCDFS SVESIQHYLL ELEHDFNTLM NASNHEICYS PTYNSFPSST TFRLEGVHDA 60 EGSLACKREH PKVEREFHAP PAWKRYRGVR RRPWGKFAAE IRDPKKNGAR IWLGTYETEE 120 EAGLAYDRAA FKMRGSKAKL NFPHLIGSHA PLKPIRVLTK TLKQNLLESD LSYSSAPQTQ 180 ESKKRKNLTD LLNRLAKNRK QVEVFEMSLH ASNDVNVDQW WSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-30 | 84 | 148 | 4 | 68 | ATERF1 |
3gcc_A | 2e-30 | 84 | 148 | 4 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G112700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092019 | 0.0 | BT092019.1 Soybean clone JCVI-FLGm-9K2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236246.2 | 1e-168 | DNA-binding domain-containing protein | ||||
TrEMBL | I1JMR6 | 1e-167 | I1JMR6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G26520.1 | 1e-168 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 6e-39 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G112700.1.p |