PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.03G081500.4.p

Common Name

GLYMA_03G081500, LOC100814846

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Trihelix

Protein Properties

Length: 281aa MW: 32597.5 Da PI: 4.6138

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.03G081500.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.2	3.2e-16	19	95	2	72
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrt 72 Wt+qe+ +Li+a++e++ +l+rg l+ ++Weev+ ++ +s+ qC++k+e+l++r++++k+++ + + Glyma.03G081500.4.p 19 WTHQETVHLIRAYQEKWYALKRGPLRHNQWEEVAVVVaarcgydL-AHPAKSALQCRHKMEKLRQRHRAEKKQQHSAA 95 ***********************************86666522.23368*******************998863 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.04	18	81	IPR017877	Myb-like domain
Pfam	PF13837	2.9E-15	18	111	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MATPPNDAAS TKKPQPIPWT HQETVHLIRA YQEKWYALKR GPLRHNQWEE VAVVVAARCG 60 YDLAHPAKSA LQCRHKMEKL RQRHRAEKKQ QHSAADALRP GAWQYNALMD DLERGPLPIS 120 ALAPLYSDEE EDEDDDDAID DQYDNDGDEG FINIKSKSIN CILSERPVRM RSNDRGFLRE 180 HVVVVEEEEE EEEEEEVEEE EENENEDDDV LGLSMEMRVF AERFIGMESL KMEMMKETER 240 CRLEMEKKRI QMILESQRRI VDSIGKAFGS SKRVKITQQN *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.41850	0.0	pod

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.03G081500.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	1e-97	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003522202.1	0.0	serine/threonine-protein kinase rio2
TrEMBL	K7KDQ9	0.0	K7KDQ9_SOYBN; Uncharacterized protein
STRING	GLYMA03G18755.4	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	5e-24	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Glyma.03G081500.4.p
Entrez Gene	100814846