PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G067700.1.p
Common NameGLYMA_03G067700, LOC100804148
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 319aa    MW: 35676.6 Da    PI: 7.7958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G067700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000235577123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + F++   L  H+++H
  Glyma.03G067700.1.p 55 YSCSFCRREFRSAQALGGHMNVH 77
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-65281No hitNo description
PROSITE profilePS5015711.2195582IPR007087Zinc finger, C2H2
SMARTSM003550.00985577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0048441Biological Processpetal development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEQGQCWTKK KKYSLNSTSL GSPTNPSYGD SWEEQAFAED AANSLGGCIW PPRSYSCSFC  60
RREFRSAQAL GGHMNVHRRD RARLKQQPSS PHNEILCRHD LETQLHNKPV HQSSFASLGG  120
YLYPSPVCGL AYKKTNPNSD PDFVASPSSS PSLSKALLAP SVNIGTFREE TMIPLYDSSI  180
LHEISPASNN SSESWPNSAE DHRLYSCKFY PQADTKKASK EIMDSRYRDN KGNNDDIDGD  240
MSLNSVVYRT YPSLQFESTK EPDHISCKKR KTDASSTLFS SQSSSVDRHH VKPKMFEFSP  300
SSIEELDLEL RLGNRSKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-135077229superman protein
2l1o_A9e-135077229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.198930.0flower| hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G067700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522120.10.0zinc finger protein 10
RefseqXP_028224637.10.0zinc finger protein 10-like
TrEMBLA0A0B2PU200.0A0A0B2PU20_GLYSO; Putative transcriptional regulator RABBIT EARS
TrEMBLI1JLM00.0I1JLM0_SOYBN; Uncharacterized protein
STRINGGLYMA03G11960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-26zinc-finger protein 10