PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G050800.1.p
Common NameGLYMA_03G050800, LOC100791800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 524aa    MW: 59649.5 Da    PI: 4.9234
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G050800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS153.12.5e-471505183374
                 GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          + L +  ea+ +g+++l + +L  +++ +sp  +p++R+a+y+ + +++r  +        +  ++++   s++  aa+k+f++  P  k
  Glyma.03G050800.1.p 150 HMLEALGEAIYQGKKALKEVILRCMRQKVSPLYEPLERVAFYLCQDMETRQDD--------FYLKQEA---SKNFEAAFKAFYQGLPHGK 228
                          667778899****************************************9988........5555655...77888999*********** PP

                 GRAS  93 fshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpf 176
                          ++h++aN aIlea+ ++ e +Hi+Dfd+++G QWp+L++++a+ +    +l++T++++ e+g     s  + ee+++ L++ A++ ++++
  Glyma.03G050800.1.p 229 VAHFVANLAILEALPHDsEVIHIVDFDMGEGSQWPPLIESIATLR---KTLKLTAIKRGEEGsevvsSPWKFEEIKRVLHEHARSRDLKL 315
                          **************9885777*********************864...56********9988889988899*****************99 PP

                 GRAS 177 efnvlvakrledl..eleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.vvvvveqe.adh..nsesFl 254
                            +    k++e++  el++++  +      ++  a n+++ l ++   ++s++ + +e+L+l+ks  ++ +v++ +   ++   n+ +F+
  Glyma.03G050800.1.p 316 MVEE---KEMEEVvsELKKIN--KsvgsgkRDFYAFNCMVGLPHMG--RGSSRRHATEFLNLIKSCGSRgIVTFGDARvCEKleNDLEFV 398
                          8776...56666622333332..23355669**************9..67777778**********9985788888775554579***** PP

                 GRAS 255 erflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343
                            f + l +y al++s+e+ +p++  ++r+ +E  +++++i+++   ++ e  e +e+ e+  +   + G++ ++ls+ + +++  +l+ 
  Glyma.03G050800.1.p 399 SFFERHLLHYKALLESIESHFPNHFtDARSAMECLFVAPNISSLAWLQKWE--EIKEESESYFQ--ADIGLEGLRLSNAILMEVGEMLSG 484
                          *********************9997799****************9999999..66666665544..579********************9 PP

                 GRAS 344 vksdgyrve...eesgslvlgWkdrpLvsvSaWr 374
                           ++  y+     +++++l+l Wk+ pLv vS Wr
  Glyma.03G050800.1.p 485 SEQGSYQARiegQNDNQLTLEWKGTPLVRVSTWR 518
                          9966677665577899*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.979122495IPR005202Transcription factor GRAS
PfamPF035148.6E-45150518IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MMHPEILESS SWSSIYEVNS STIGHQFEHY GFEVDAHVGV SVFNSLFNTP ENTSSETSIN  60
TLPSIMFTNE YDHFLHYQIE KDTLQLPKLM DVYGLSMDCD DFDPILRDHQ ESEGDWSPTP  120
SLDSDLSSNQ KALTLPQQGM EIENQVSLPH MLEALGEAIY QGKKALKEVI LRCMRQKVSP  180
LYEPLERVAF YLCQDMETRQ DDFYLKQEAS KNFEAAFKAF YQGLPHGKVA HFVANLAILE  240
ALPHDSEVIH IVDFDMGEGS QWPPLIESIA TLRKTLKLTA IKRGEEGSEV VSSPWKFEEI  300
KRVLHEHARS RDLKLMVEEK EMEEVVSELK KINKSVGSGK RDFYAFNCMV GLPHMGRGSS  360
RRHATEFLNL IKSCGSRGIV TFGDARVCEK LENDLEFVSF FERHLLHYKA LLESIESHFP  420
NHFTDARSAM ECLFVAPNIS SLAWLQKWEE IKEESESYFQ ADIGLEGLRL SNAILMEVGE  480
MLSGSEQGSY QARIEGQNDN QLTLEWKGTP LVRVSTWRKI KGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1317151826375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G050800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003522050.10.0nodulation-signaling pathway 2 protein
TrEMBLK7KCY70.0K7KCY7_SOYBN; Uncharacterized protein
STRINGGLYMA03G06530.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Representative plantOGRP9520612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.14e-17GRAS family protein