PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G025400.1.p | ||||||||
Common Name | GLYMA_03G025400, LOC100817146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 331aa MW: 37607.7 Da PI: 6.5129 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.5e-12 | 193 | 218 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ Glyma.03G025400.1.p 193 YQPDICKDYKETGYCGYGDSCKFMHD 218 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-9 | 191 | 223 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 192 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-12 | 193 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 193 | 218 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 3.8E-13 | 257 | 311 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.79E-13 | 269 | 312 | No hit | No description |
Pfam | PF13920 | 4.5E-9 | 269 | 311 | No hit | No description |
SMART | SM00184 | 1.3E-4 | 270 | 307 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.542 | 270 | 308 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 3.53E-8 | 270 | 311 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 285 | 294 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0034247 | Biological Process | snoRNA splicing | ||||
GO:0045292 | Biological Process | mRNA cis splicing, via spliceosome | ||||
GO:0005684 | Cellular Component | U2-type spliceosomal complex | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MEDSDQPAKS AENQQTEQVC SFFRKPVNKK NLRKRTIEIE DNEEDSNNET SLLHIQKKTL 60 KADNKLYFST GSSKSSASAE PSEESGKTVF QFESSKEIQV QHDSKATAIL ETETEFSKDA 120 RAIRERALKQ AEESLKGKSA SSEDKKLYKG MNSYKDYKAG FRREQTIASE KAGGSHGPLR 180 ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFMHDRG DYKSGWQMEK EWEEAEKQRK 240 MRLAAGEDAD EEEGANLTDE DDEDSLPFAC FICRNSFVDP VVTKCKHYFC EHCALKHHSK 300 NKKCFVCNQP TLGIFNVAHE IRRKMAEDKS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 3e-70 | 16 | 325 | 11 | 317 | RING finger protein 113A |
5z58_M | 3e-70 | 16 | 325 | 11 | 317 | RING finger protein 113A |
6ff4_t | 3e-70 | 16 | 325 | 11 | 317 | RING finger protein 113A |
6ff7_t | 3e-70 | 16 | 325 | 11 | 317 | RING finger protein 113A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4975 | 0.0 | hypocotyl| leaf| pod| root| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G025400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM587703 | 0.0 | KM587703.1 Glycine max clone GmC3H6 C3H zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001304643.1 | 0.0 | zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_003521790.1 | 0.0 | zinc finger CCCH domain-containing protein 1 isoform X1 | ||||
Refseq | XP_028224191.1 | 0.0 | zinc finger CCCH domain-containing protein 1-like | ||||
Swissprot | Q8GX84 | 1e-163 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A0B2RTQ9 | 0.0 | A0A0B2RTQ9_GLYSO; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | I1JKM9 | 0.0 | I1JKM9_SOYBN; C3H zinc finger protein | ||||
STRING | GLYMA03G02920.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7082 | 33 | 48 | Representative plant | OGRP5896 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-150 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G025400.1.p |
Entrez Gene | 100817146 |