PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.03G019400.1.p
Common NameGLYMA_03G019400, LOC100810549
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28374.2 Da    PI: 9.0486
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.03G019400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.28.2e-32958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  Glyma.03G019400.1.p  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                         79**********************************************95 PP
2K-box101.11.5e-33811701099
                K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                           e +++s++qe++kLk+++e+Lqr+qRhllGedL++L++keLq++e+qLe +l + R++K+++++eq+eel+++e+ l + nk+Lr kle
  Glyma.03G019400.1.p  81 VECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNIEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLE 170
                          45679*********************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.445161IPR002100Transcription factor, MADS-box
CDDcd002651.17E-44273No hitNo description
SuperFamilySSF554553.92E-33279IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.9E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-333859IPR002100Transcription factor, MADS-box
PfamPF014867.2E-3084169IPR002487Transcription factor, K-box
PROSITE profilePS5129716.68385175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGSV  60
GTTNTIERYQ RSSFTPQDEH VECETQSWYQ EVSKLKAKYE SLQRTQRHLL GEDLGPLNIK  120
ELQNIEKQLE GALAQARQRK TQIMIEQMEE LRRRERHLGD MNKQLRLKLE AEGFNLKATE  180
SLLSFTSAAG NSGFHFQQPP QTNPIDYQQP EPFLQIGYHQ YVQSEASNVP KSMACETNFM  240
QGWIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A8e-23751738104Developmental protein SEPALLATA 3
4ox0_B8e-23751738104Developmental protein SEPALLATA 3
4ox0_C8e-23751738104Developmental protein SEPALLATA 3
4ox0_D8e-23751738104Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.03G019400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0940230.0BT094023.1 Soybean clone JCVI-FLGm-18E21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521437.10.0MADS-box transcription factor 6
RefseqXP_028224124.10.0MADS-box transcription factor 6-like
SwissprotQ8LLR11e-138MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0B2P8U50.0A0A0B2P8U5_GLYSO; MADS-box transcription factor 6
TrEMBLI1JKH70.0I1JKH7_SOYBN; Uncharacterized protein
STRINGGLYMA03G02210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-105AGAMOUS-like 6
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]