PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G007600.1.p | ||||||||
Common Name | GLYMA_03G007600, LOC100818735 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WOX | ||||||||
Protein Properties | Length: 296aa MW: 32100.8 Da PI: 7.169 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.8 | 2.4e-15 | 30 | 90 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Glyma.03G007600.1.p 30 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgAVGDANVFYWFQNRRSRSRR 90 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.5 | 8.1e-35 | 29 | 92 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q Glyma.03G007600.1.p 29 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGAVGDANVFYWFQNRRSRSRRRQ 92 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.41E-13 | 25 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.337 | 26 | 91 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-9 | 26 | 99 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-6 | 28 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.5E-13 | 30 | 90 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MEDQGQQQQQ QHQVEAKSPR QGTERSEAVR SRWTPKPEQI LILESIFNSG MVNPPKDETV 60 RIRKLLEKFG AVGDANVFYW FQNRRSRSRR RQRQMMQQQA TATATATVTT FDHPQPQTQT 120 LVNVGGAIPH DHHTLGNLVV ATESSATSTM GFGCSSQSSY GFLGSSSSSS SCGGGVIGGQ 180 QQGMDGFFSS VSSHQMGFPD HHHTSPASSA LYPPLDPNLT YQAGYGGPNI SGFITVFING 240 IATELPKGPI DLKTVFGEDV MLVHSSGVPI PTNEFGFLMH NLQHGDSYFL VSKPT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29876 | 0.0 | somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G007600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 3e-83 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520951.1 | 0.0 | WUSCHEL-related homeobox 11 | ||||
Refseq | XP_028223996.1 | 0.0 | WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 2e-69 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A445L5S1 | 0.0 | A0A445L5S1_GLYSO; WUSCHEL-related homeobox 11 isoform B | ||||
TrEMBL | I1JK62 | 0.0 | I1JK62_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G01000.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5898 | 31 | 52 | Representative plant | OGRP4697 | 12 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 1e-61 | WUSCHEL related homeobox 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G007600.1.p |
Entrez Gene | 100818735 |
Publications ? help Back to Top | |||
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