PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.03G002300.1.p | ||||||||
Common Name | GLYMA_03G002300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 236aa MW: 26757.9 Da PI: 4.5915 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 36.6 | 9.3e-12 | 95 | 135 | 22 | 59 |
EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 sYYrCt++ +C+++k+v+r +edp + ++tY ++H+++ Glyma.03G002300.1.p 95 MSYYRCTHKydqNCQATKQVQRIQEDPPLYKTTYLSHHTCN 135 59******9999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03106 | 9.7E-11 | 95 | 134 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.5E-10 | 95 | 135 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-12 | 95 | 135 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 9.97 | 96 | 132 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-8 | 96 | 136 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDDRKVLEEL VRGLEFANQL RQVMINGKDN ESSATTTTPF VQSLVKNVFR SFTNTLFLLD 60 KYPSYEVSHT TKSEDSQESC KCMQLIQSQT ITIIMSYYRC THKYDQNCQA TKQVQRIQED 120 PPLYKTTYLS HHTCNDLLNY EIIPDSNNNS PSDTSILLSF NNTFPTPTKQ ECPFLSSFPS 180 PISVKKLEEV IPASSSRHNN NVTLPPPDPW DVMSNSAMCD SVGLDDVNLF LDFDD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.03G002300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095645 | 0.0 | BT095645.1 Soybean clone JCVI-FLGm-15G11 unknown mRNA. | |||
GenBank | KT031229 | 0.0 | KT031229.1 Glycine max clone HN_CCL_115 WRKY transcription factor (Glyma03g00460.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028223931.1 | 1e-155 | probable WRKY transcription factor 70 isoform X2 | ||||
TrEMBL | A0A0R0KI04 | 1e-173 | A0A0R0KI04_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA03G00460.1 | 1e-155 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1995 | 34 | 86 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66550.2 | 6e-20 | WRKY DNA-binding protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.03G002300.1.p |