PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G261700.2.p
Common NameAP2-8, GLYMA_02G261700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 322aa    MW: 35174.9 Da    PI: 5.267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G261700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.33e-1678127154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                          + y+GVr++  +g+Wv eIr+p   + r  r +lg+f +a+eAa a+++a+++++
  Glyma.02G261700.2.p  78 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFSSAQEAALAYDEAARAMY 127
                          56*****999.**********8...3.35**********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1178127IPR001471AP2/ERF domain
CDDcd000184.56E-2378121No hitNo description
PROSITE profilePS5103219.13779137IPR001471AP2/ERF domain
SMARTSM003809.2E-2879142IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1679129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-2579131IPR001471AP2/ERF domain
PRINTSPR003677.5E-108091IPR001471AP2/ERF domain
PRINTSPR003677.5E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGAYDQVSLK PLDSSRKRKS RSRGDGSKSV AETIAKWKEY NEHLYSGKDD SRTTRKAPAK  60
GSKKGCMKGK GGPQNSQCNY RGVRQRTWGK WVGEIREPNR GSRLWLGTFS SAQEAALAYD  120
EAARAMYATA ASDTTTTTSN QSEVCAVEDV IEKPANVNDK FNDCHKAYVS ASPTSRMKQE  180
PKDEAVDHMD TGAGEIQDVG LEGTHDTGQS FSADELFQVD ELLGLIDNNP IDNSVLMQDG  240
NPQVDDTPSS FIYQLQNPDA KLLGSLPHME QTPSGVDYGL DFLKTVEPGD YNDCILTRKG  300
AFLVGGFGFW GGKNMTQFNL V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1479131255ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G261700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ2284600.0FJ228460.1 Glycine max AP2 domain-containing transcription factor 8 (AP2-8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240005.10.0dehydration-responsive element-binding protein 2C-like
TrEMBLC9WA660.0C9WA66_SOYBN; AP2 domain-containing transcription factor 8
STRINGGLYMA02G42960.11e-172(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.13e-37ERF family protein