PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G250100.1.p
Common NameGLYMA_02G250100, LOC102662367
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 287aa    MW: 31737.3 Da    PI: 8.758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G250100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000115173123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C++ F++   L  H++ H
  Glyma.02G250100.1.p 51 YSCTFCTRDFKSAQALGGHMNIH 73
                         99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-44876IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.72E-64878No hitNo description
PROSITE profilePS5015710.995178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MERSHSQTQY RMYVKREQHS HLGDYSSWEE RAFAEDAARI LGGNMWPQRS YSCTFCTRDF  60
KSAQALGGHM NIHQRDRARL KQQNHLSPHH KNHHFIIKSL LGNNKLHFSS APEISTQLDC  120
GLTHHACYSS SPATTITTTR LFSCISSTQD QNCGHHNFSP SSSNSCSSSI ILGHVGSPNS  180
EQEGVVKARD YKFNGLGCSN YVETSLSVGL TSMFGQNSSS PTTVPCGDRS NNSCKRLRSS  240
IVSSLPLFPK PCSNDKSSAF QPVVHGTVED LDLELRLGKR NRNLSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G250100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006576100.10.0zinc finger protein 10
RefseqXP_028190917.10.0zinc finger protein 10-like
TrEMBLA0A0R0L1G60.0A0A0R0L1G6_SOYBN; Uncharacterized protein
TrEMBLA0A445LTW60.0A0A445LTW6_GLYSO; Zinc finger protein 10
STRINGXP_007141854.13e-80(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-24zinc-finger protein 10